Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.33□□□□□ -2.62
CDX1P47902 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.33□□□□□ -2.62
CDX1P47902 RNU6-675P-201ENST00000384236 104 ntBASIC-1.33□□□□□ -2.62
CDX1P47902 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 SNORD45.1-201ENST00000363181 77 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 RNU6-540P-201ENST00000384622 101 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 RNU6-406P-201ENST00000516470 107 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 IGLL4P-201ENST00000614590 133 ntBASIC-1.34□□□□□ -2.62
CDX1P47902 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.35□□□□□ -2.63
CDX1P47902 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.35□□□□□ -2.63
CDX1P47902 RNU6-44P-201ENST00000384045 107 ntBASIC-1.35□□□□□ -2.63
CDX1P47902 AC074348.1-201ENST00000426503 132 ntBASIC-1.35□□□□□ -2.63
CDX1P47902 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.36□□□□□ -2.63
CDX1P47902 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.36□□□□□ -2.63
CDX1P47902 MIR1297-201ENST00000637311 77 ntBASIC-1.36□□□□□ -2.63
CDX1P47902 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.37□□□□□ -2.63
CDX1P47902 RNU6-608P-201ENST00000383927 104 ntBASIC-1.37□□□□□ -2.63
CDX1P47902 RNU6-604P-201ENST00000390917 100 ntBASIC-1.37□□□□□ -2.63
CDX1P47902 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.37□□□□□ -2.63
CDX1P47902 RNU6-983P-201ENST00000516004 103 ntBASIC-1.37□□□□□ -2.63
CDX1P47902 RNU6-228P-201ENST00000362700 106 ntBASIC-1.38□□□□□ -2.63
CDX1P47902 RNU6-695P-201ENST00000391157 104 ntBASIC-1.38□□□□□ -2.63
CDX1P47902 MIR4484-201ENST00000582855 83 ntBASIC-1.38□□□□□ -2.63
CDX1P47902 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 RNU6-458P-201ENST00000384179 107 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 MIR520D-201ENST00000385002 87 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 RNU6-630P-201ENST00000391258 106 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 AC108019.1-201ENST00000512540 175 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 U6.58-201ENST00000613107 107 ntBASIC-1.39□□□□□ -2.63
CDX1P47902 RNY1P1-201ENST00000364372 112 ntBASIC-1.4□□□□□ -2.63
CDX1P47902 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.4□□□□□ -2.63
CDX1P47902 RNU6-696P-201ENST00000390834 107 ntBASIC-1.4□□□□□ -2.63
CDX1P47902 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.41□□□□□ -2.64
CDX1P47902 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.41□□□□□ -2.64
CDX1P47902 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.41□□□□□ -2.64
CDX1P47902 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.42□□□□□ -2.64
CDX1P47902 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
CDX1P47902 RNU6-982P-201ENST00000516216 102 ntBASIC-1.42□□□□□ -2.64
CDX1P47902 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.42□□□□□ -2.64
CDX1P47902 RNA5SP89-201ENST00000410300 108 ntBASIC-1.43□□□□□ -2.64
CDX1P47902 RNU6-563P-201ENST00000364872 108 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 RNU6-841P-201ENST00000383872 107 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 AC120024.2-201ENST00000576526 175 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 MIR4756-201ENST00000577874 78 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 MIR23C-201ENST00000579846 100 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 MIR3123-201ENST00000583417 75 ntBASIC-1.44□□□□□ -2.64
CDX1P47902 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 RNY4P27-201ENST00000363341 96 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 RNU6-49P-201ENST00000384256 107 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 MTND4LP1-201ENST00000446263 157 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 MIR664B-201ENST00000626756 61 ntBASIC-1.45□□□□□ -2.64
CDX1P47902 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 RNU6-598P-201ENST00000364017 105 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 RNY4P30-201ENST00000410216 95 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 RNU7-174P-201ENST00000516248 59 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 MIR548AM-201ENST00000584298 74 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 U2.22-201ENST00000636441 106 ntBASIC-1.46□□□□□ -2.64
CDX1P47902 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.47□□□□□ -2.64
CDX1P47902 MIR8053-201ENST00000613344 75 ntBASIC-1.47□□□□□ -2.64
CDX1P47902 U2.18-201ENST00000622185 84 ntBASIC-1.47□□□□□ -2.64
CDX1P47902 RNU6-315P-201ENST00000362666 107 ntBASIC-1.48□□□□□ -2.65
CDX1P47902 RNU6-587P-201ENST00000391282 106 ntBASIC-1.48□□□□□ -2.65
CDX1P47902 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.48□□□□□ -2.65
CDX1P47902 MIR5588-201ENST00000581890 63 ntBASIC-1.48□□□□□ -2.65
CDX1P47902 MIR429-201ENST00000362106 83 ntBASIC-1.49□□□□□ -2.65
CDX1P47902 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.49□□□□□ -2.65
CDX1P47902 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.49□□□□□ -2.65
CDX1P47902 RNU6-980P-201ENST00000516925 103 ntBASIC-1.49□□□□□ -2.65
CDX1P47902 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.5□□□□□ -2.65
CDX1P47902 MIR3170-201ENST00000582699 77 ntBASIC-1.5□□□□□ -2.65
CDX1P47902 RNU6-668P-201ENST00000364180 107 ntBASIC-1.51□□□□□ -2.65
CDX1P47902 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.51□□□□□ -2.65
CDX1P47902 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.51□□□□□ -2.65
CDX1P47902 RNU6-258P-201ENST00000390884 101 ntBASIC-1.51□□□□□ -2.65
CDX1P47902 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.51□□□□□ -2.65
CDX1P47902 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.51□□□□□ -2.65
CDX1P47902 RNU6-698P-201ENST00000363523 107 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 RNU6-34P-201ENST00000364874 107 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 RNU4-88P-201ENST00000411220 86 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 U4.4-201ENST00000620626 117 ntBASIC-1.52□□□□□ -2.65
CDX1P47902 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.53□□□□□ -2.65
CDX1P47902 RNU6-979P-201ENST00000383896 107 ntBASIC-1.53□□□□□ -2.65
CDX1P47902 MIR548V-201ENST00000584165 80 ntBASIC-1.53□□□□□ -2.65
CDX1P47902 SNORD113.1-201ENST00000363280 73 ntBASIC-1.55□□□□□ -2.66
CDX1P47902 RNU6-247P-201ENST00000362636 107 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 RNA5SP215-201ENST00000363440 122 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.56□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms