Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-1312P-201ENST00000362425 108 ntBASIC0□□□□□ -2.41
MSX2P35548 RNU7-88P-201ENST00000458752 63 ntBASIC0□□□□□ -2.41
MSX2P35548 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0□□□□□ -2.41
MSX2P35548 RNU6-810P-201ENST00000364001 107 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 RNU6-987P-201ENST00000384759 104 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 SNORA40B-201ENST00000385573 128 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 MIR5589-201ENST00000579442 60 ntBASIC-0.01□□□□□ -2.41
MSX2P35548 RNU6-924P-201ENST00000362926 108 ntBASIC-0.02□□□□□ -2.41
MSX2P35548 MIR124-2-201ENST00000385081 109 ntBASIC-0.02□□□□□ -2.41
MSX2P35548 RNU4-37P-201ENST00000410214 84 ntBASIC-0.02□□□□□ -2.41
MSX2P35548 MIR6851-201ENST00000617060 67 ntBASIC-0.02□□□□□ -2.41
MSX2P35548 SNORD57-201ENST00000448188 72 ntBASIC-0.03□□□□□ -2.41
MSX2P35548 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
MSX2P35548 SNORA18.1-201ENST00000363418 128 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 MIR579-201ENST00000385221 98 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
MSX2P35548 SNORD38.3-201ENST00000516599 73 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 RNU7-151P-201ENST00000516930 53 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 RNA5SP66-201ENST00000517178 101 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 MIR7978-201ENST00000636158 59 ntBASIC-0.05□□□□□ -2.42
MSX2P35548 SNORD114-12-201ENST00000365400 75 ntBASIC-0.06□□□□□ -2.42
MSX2P35548 MIR548AA1-201ENST00000384971 97 ntBASIC-0.06□□□□□ -2.42
MSX2P35548 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
MSX2P35548 MIR4490-201ENST00000582647 84 ntBASIC-0.06□□□□□ -2.42
MSX2P35548 MIR1295B-201ENST00000636144 60 ntBASIC-0.06□□□□□ -2.42
MSX2P35548 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.07□□□□□ -2.42
MSX2P35548 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.08□□□□□ -2.42
MSX2P35548 RNU6-732P-201ENST00000516033 103 ntBASIC-0.08□□□□□ -2.42
MSX2P35548 SNORD63.1-201ENST00000516178 80 ntBASIC-0.08□□□□□ -2.42
MSX2P35548 MIR4263-201ENST00000584745 83 ntBASIC-0.08□□□□□ -2.42
MSX2P35548 RNU7-160P-201ENST00000516660 62 ntBASIC-0.09□□□□□ -2.42
MSX2P35548 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.09□□□□□ -2.42
MSX2P35548 MIR3666-201ENST00000607845 111 ntBASIC-0.09□□□□□ -2.42
MSX2P35548 AC093726.3-201ENST00000637588 150 ntBASIC-0.09□□□□□ -2.42
MSX2P35548 SNORD114-31-201ENST00000363219 75 ntBASIC-0.1□□□□□ -2.43
MSX2P35548 MIR125B1-201ENST00000385236 88 ntBASIC-0.1□□□□□ -2.43
MSX2P35548 SNORD74.6-201ENST00000364796 70 ntBASIC-0.11□□□□□ -2.43
MSX2P35548 RNU6-141P-201ENST00000410499 105 ntBASIC-0.11□□□□□ -2.43
MSX2P35548 SNORD4A-201ENST00000459174 72 ntBASIC-0.11□□□□□ -2.43
MSX2P35548 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.12□□□□□ -2.43
MSX2P35548 SNORA32.1-201ENST00000364514 115 ntBASIC-0.12□□□□□ -2.43
MSX2P35548 RNU6-936P-201ENST00000384005 107 ntBASIC-0.12□□□□□ -2.43
MSX2P35548 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.12□□□□□ -2.43
MSX2P35548 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.13□□□□□ -2.43
MSX2P35548 MIR518B-201ENST00000385127 83 ntBASIC-0.13□□□□□ -2.43
MSX2P35548 RNU6-995P-201ENST00000391244 107 ntBASIC-0.13□□□□□ -2.43
MSX2P35548 IGLVI-20-201ENST00000519296 130 ntBASIC-0.13□□□□□ -2.43
MSX2P35548 MIR214-201ENST00000385214 110 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 SNORD19-201ENST00000391191 68 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 RNA5SP300-201ENST00000391197 107 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 SNORD22.1-201ENST00000516331 125 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 RNU6-980P-201ENST00000516925 103 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 MIR4788-201ENST00000639104 80 ntBASIC-0.14□□□□□ -2.43
MSX2P35548 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.15□□□□□ -2.43
MSX2P35548 MIR548X-201ENST00000580069 75 ntBASIC-0.15□□□□□ -2.43
MSX2P35548 AP001180.6-201ENST00000584918 159 ntBASIC-0.15□□□□□ -2.43
MSX2P35548 SNORD114-11-201ENST00000363738 75 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 SNORD18.2-201ENST00000459604 70 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 RNA5SP169-201ENST00000517268 117 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 MIR4493-201ENST00000584016 73 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.16□□□□□ -2.44
MSX2P35548 RNU6-808P-201ENST00000391233 108 ntBASIC-0.17□□□□□ -2.44
MSX2P35548 MIR3170-201ENST00000582699 77 ntBASIC-0.17□□□□□ -2.44
MSX2P35548 SNORD75.1-201ENST00000408373 60 ntBASIC-0.18□□□□□ -2.44
MSX2P35548 RNU6-419P-201ENST00000517030 63 ntBASIC-0.18□□□□□ -2.44
MSX2P35548 SNORA13-201ENST00000458790 133 ntBASIC-0.19□□□□□ -2.44
MSX2P35548 RNU6-828P-201ENST00000364876 107 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 SNORA26.4-201ENST00000391188 123 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 MIR3179-1-201ENST00000578940 84 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 MIR3179-2-201ENST00000579107 84 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 MIR3179-3-201ENST00000579566 84 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 MIR3179-4-201ENST00000617599 84 ntBASIC-0.2□□□□□ -2.44
MSX2P35548 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.21□□□□□ -2.44
MSX2P35548 RNU4-33P-201ENST00000364316 85 ntBASIC-0.21□□□□□ -2.44
MSX2P35548 MIR204-201ENST00000385200 110 ntBASIC-0.21□□□□□ -2.44
MSX2P35548 RNU6-758P-201ENST00000516292 89 ntBASIC-0.21□□□□□ -2.44
MSX2P35548 AP002795.1-201ENST00000534879 84 ntBASIC-0.21□□□□□ -2.44
MSX2P35548 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.22□□□□□ -2.44
MSX2P35548 MIR548Q-201ENST00000408404 100 ntBASIC-0.22□□□□□ -2.44
MSX2P35548 Z95118.1-201ENST00000421372 247 ntBASIC-0.22□□□□□ -2.44
MSX2P35548 MIR4645-201ENST00000583158 77 ntBASIC-0.22□□□□□ -2.44
MSX2P35548 SNORD115-33-201ENST00000363723 82 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 RNA5SP368-201ENST00000364298 116 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 RNU6-974P-201ENST00000384099 108 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 MIR520D-201ENST00000385002 87 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 RNU6-721P-201ENST00000410155 105 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 RNA5SP25-201ENST00000410815 110 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 AP000533.3-201ENST00000447704 118 ntBASIC-0.23□□□□□ -2.45
MSX2P35548 MIR101-1-201ENST00000362265 75 ntBASIC-0.24□□□□□ -2.45
MSX2P35548 Y_RNA.379-201ENST00000365653 102 ntBASIC-0.24□□□□□ -2.45
MSX2P35548 MIR604-201ENST00000384880 94 ntBASIC-0.24□□□□□ -2.45
MSX2P35548 snoU13.19-201ENST00000459148 104 ntBASIC-0.24□□□□□ -2.45
MSX2P35548 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.25□□□□□ -2.45
MSX2P35548 SNORD63.2-201ENST00000516303 64 ntBASIC-0.25□□□□□ -2.45
MSX2P35548 SNORD114-28-201ENST00000363610 72 ntBASIC-0.26□□□□□ -2.45
MSX2P35548 SNORD114-17-201ENST00000364699 75 ntBASIC-0.26□□□□□ -2.45
MSX2P35548 AL353691.2-201ENST00000443795 59 ntBASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms