Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 MTRNR2L9-201ENST00000622562 75 ntBASIC0.81□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 AC104692.1-201ENST00000472406 90 ntBASIC0.8□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 AC108740.1-201ENST00000498629 225 ntBASIC0.8□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 RNU6-1174P-201ENST00000517278 101 ntBASIC0.8□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 uc_338.17-201ENST00000619633 179 ntBASIC0.8□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 MIR6888-201ENST00000621977 67 ntBASIC0.8□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 Y_RNA.206-201ENST00000364136 102 ntBASIC0.79□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 MIR604-201ENST00000384880 94 ntBASIC0.79□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 MIR4464-201ENST00000580818 92 ntBASIC0.79□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 MIR4493-201ENST00000584016 73 ntBASIC0.79□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 AL445584.3-201ENST00000617173 78 ntBASIC0.79□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 RNU7-55P-201ENST00000459426 62 ntBASIC0.78□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 SNORD44.1-201ENST00000363202 61 ntBASIC0.77□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-973P-201ENST00000364690 107 ntBASIC0.77□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-530P-201ENST00000391180 107 ntBASIC0.77□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 SNORD63.2-201ENST00000516303 64 ntBASIC0.77□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 SNORD95.1-201ENST00000364099 68 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 Y_RNA.321-201ENST00000365149 102 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-258P-201ENST00000390884 101 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 Y_RNA.613-201ENST00000410726 97 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-894P-201ENST00000517094 105 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 MIR3170-201ENST00000582699 77 ntBASIC0.76□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-900P-201ENST00000384498 102 ntBASIC0.75□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 Y_RNA.610-201ENST00000410681 103 ntBASIC0.75□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.75□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 uc_338.36-201ENST00000622331 158 ntBASIC0.75□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 MIR1207-201ENST00000408249 87 ntBASIC0.73□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 AC104408.1-201ENST00000605241 170 ntBASIC0.73□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 Y_RNA.345-201ENST00000365384 92 ntBASIC0.72□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 MIR92A1-201ENST00000385233 78 ntBASIC0.72□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-1326P-201ENST00000391262 107 ntBASIC0.72□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 AC096531.1-201ENST00000419107 107 ntBASIC0.72□□□□□ -2.29
SENP3-EIF4A1A0A087X0R7 RNU6-1111P-201ENST00000391118 107 ntBASIC0.71□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 SNORD111B-201ENST00000408587 80 ntBASIC0.71□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 AP001180.6-201ENST00000584918 159 ntBASIC0.71□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 U4.2-201ENST00000618561 85 ntBASIC0.71□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 MIR520D-201ENST00000385002 87 ntBASIC0.7□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 RNU6-127P-201ENST00000390897 107 ntBASIC0.7□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 RNY1P9-201ENST00000532431 109 ntBASIC0.7□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 MIR6514-201ENST00000622549 70 ntBASIC0.69□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 CR383656.4-201ENST00000546909 122 ntBASIC0.68□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 MIR8068-201ENST00000618032 68 ntBASIC0.68□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 RNU6-455P-201ENST00000384681 107 ntBASIC0.67□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 SNORD19-201ENST00000391191 68 ntBASIC0.67□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 RNU6-1238P-201ENST00000517215 102 ntBASIC0.67□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 MIR6507-201ENST00000613630 70 ntBASIC0.67□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 SNORD114-31-201ENST00000363219 75 ntBASIC0.66□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 AC114737.2-201ENST00000421583 173 ntBASIC0.66□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 RNU6-732P-201ENST00000516033 103 ntBASIC0.66□□□□□ -2.3
SENP3-EIF4A1A0A087X0R7 MIR103A1-201ENST00000362165 78 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR148A-201ENST00000362215 68 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 SNORA68.3-201ENST00000515906 83 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR5190-201ENST00000581537 80 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR5704-201ENST00000584029 77 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR4317-201ENST00000637586 65 ntBASIC0.65□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-485P-201ENST00000363475 107 ntBASIC0.64□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 AP002795.1-201ENST00000534879 84 ntBASIC0.64□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-1047P-201ENST00000364418 107 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR601-201ENST00000385256 79 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR892B-201ENST00000401279 77 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR548Q-201ENST00000408404 100 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR6854-201ENST00000614935 69 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR6718-201ENST00000616153 80 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR4426-201ENST00000640330 63 ntBASIC0.63□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIRLET7D-201ENST00000362263 87 ntBASIC0.62□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR643-201ENST00000385267 97 ntBASIC0.62□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-815P-201ENST00000384080 113 ntBASIC0.61□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR124-2-201ENST00000385081 109 ntBASIC0.61□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNY3P8-201ENST00000411366 126 ntBASIC0.61□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-901P-201ENST00000384593 106 ntBASIC0.6□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNA5SP163-201ENST00000410304 99 ntBASIC0.6□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-180P-201ENST00000516697 61 ntBASIC0.6□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 MIR202-201ENST00000362219 110 ntBASIC0.59□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 SNORA27.2-201ENST00000363365 126 ntBASIC0.59□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-300P-201ENST00000459080 104 ntBASIC0.59□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 Y_RNA.699-201ENST00000516803 93 ntBASIC0.59□□□□□ -2.31
SENP3-EIF4A1A0A087X0R7 RNU6-1233P-201ENST00000362922 102 ntBASIC0.58□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 SNORA42.1-201ENST00000363515 137 ntBASIC0.58□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 AC069113.3-201ENST00000521019 150 ntBASIC0.58□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 RNA5SP134-201ENST00000516492 96 ntBASIC0.57□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 RNU6-361P-201ENST00000364454 107 ntBASIC0.56□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 SNORD49B-201ENST00000365172 72 ntBASIC0.56□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 RNU6-133P-201ENST00000383989 107 ntBASIC0.56□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 SNORA50A-201ENST00000384225 134 ntBASIC0.56□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 AC114755.3-201ENST00000481111 251 ntBASIC0.55□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 AC090625.1-201ENST00000357130 210 ntBASIC0.54□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 RNU6-608P-201ENST00000383927 104 ntBASIC0.54□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 MIR198-201ENST00000637333 62 ntBASIC0.54□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 Y_RNA.413-201ENST00000384007 102 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 MIR548H2-201ENST00000408874 88 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 Y_RNA.754-201ENST00000476024 102 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 RNA5SP169-201ENST00000517268 117 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 MIR548AX-201ENST00000580117 73 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 MIR4743-201ENST00000584576 69 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms