Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MIR6755-201ENST00000619993 66 ntBASIC1.44□□□□□ -2.18
CCDC61Q9Y6R9 RNA5SP98-201ENST00000363158 137 ntBASIC1.43□□□□□ -2.18
CCDC61Q9Y6R9 MIR1468-201ENST00000410600 86 ntBASIC1.43□□□□□ -2.18
CCDC61Q9Y6R9 MIR3925-201ENST00000584674 77 ntBASIC1.43□□□□□ -2.18
CCDC61Q9Y6R9 AL391099.1-201ENST00000624635 187 ntBASIC1.43□□□□□ -2.18
CCDC61Q9Y6R9 RNA5SP128-201ENST00000365305 116 ntBASIC1.42□□□□□ -2.18
CCDC61Q9Y6R9 RNU6-955P-201ENST00000410497 104 ntBASIC1.42□□□□□ -2.18
CCDC61Q9Y6R9 Y_RNA.345-201ENST00000365384 92 ntBASIC1.41□□□□□ -2.18
CCDC61Q9Y6R9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.41□□□□□ -2.18
CCDC61Q9Y6R9 MIR4661-201ENST00000582720 75 ntBASIC1.41□□□□□ -2.18
CCDC61Q9Y6R9 MIR6515-201ENST00000619843 57 ntBASIC1.41□□□□□ -2.18
CCDC61Q9Y6R9 RNU4-38P-201ENST00000364472 129 ntBASIC1.4□□□□□ -2.19
CCDC61Q9Y6R9 MIR150-201ENST00000385048 84 ntBASIC1.4□□□□□ -2.19
CCDC61Q9Y6R9 RNU4-54P-201ENST00000516428 129 ntBASIC1.4□□□□□ -2.19
CCDC61Q9Y6R9 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
CCDC61Q9Y6R9 MIR6507-201ENST00000613630 70 ntBASIC1.39□□□□□ -2.19
CCDC61Q9Y6R9 uc_338.36-201ENST00000622331 158 ntBASIC1.39□□□□□ -2.19
CCDC61Q9Y6R9 RNU7-129P-201ENST00000516128 62 ntBASIC1.38□□□□□ -2.19
CCDC61Q9Y6R9 SCARNA11.2-201ENST00000517183 154 ntBASIC1.38□□□□□ -2.19
CCDC61Q9Y6R9 MIR3973-201ENST00000579824 107 ntBASIC1.38□□□□□ -2.19
CCDC61Q9Y6R9 AC211469.2-201ENST00000605461 205 ntBASIC1.38□□□□□ -2.19
CCDC61Q9Y6R9 RNU6-1047P-201ENST00000364418 107 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 MIR532-201ENST00000385025 91 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 RNU6-1238P-201ENST00000517215 102 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 AL590095.2-201ENST00000604136 117 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 PVT1_3.1-201ENST00000620853 95 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 MIR499B-201ENST00000636498 73 ntBASIC1.37□□□□□ -2.19
CCDC61Q9Y6R9 Y_RNA.699-201ENST00000516803 93 ntBASIC1.36□□□□□ -2.19
CCDC61Q9Y6R9 RNA5SP480-201ENST00000516840 109 ntBASIC1.36□□□□□ -2.19
CCDC61Q9Y6R9 MIR6857-201ENST00000613267 93 ntBASIC1.36□□□□□ -2.19
CCDC61Q9Y6R9 RNU6-973P-201ENST00000364690 107 ntBASIC1.35□□□□□ -2.19
CCDC61Q9Y6R9 RNU6-732P-201ENST00000516033 103 ntBASIC1.35□□□□□ -2.19
CCDC61Q9Y6R9 MIR548Q-201ENST00000408404 100 ntBASIC1.34□□□□□ -2.19
CCDC61Q9Y6R9 MIR4426-201ENST00000640330 63 ntBASIC1.34□□□□□ -2.19
CCDC61Q9Y6R9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
CCDC61Q9Y6R9 SNORA27.2-201ENST00000363365 126 ntBASIC1.32□□□□□ -2.2
CCDC61Q9Y6R9 Y_RNA.206-201ENST00000364136 102 ntBASIC1.32□□□□□ -2.2
CCDC61Q9Y6R9 RNU7-55P-201ENST00000459426 62 ntBASIC1.32□□□□□ -2.2
CCDC61Q9Y6R9 MIR5000-201ENST00000577717 103 ntBASIC1.32□□□□□ -2.2
CCDC61Q9Y6R9 MIR608-201ENST00000384820 100 ntBASIC1.31□□□□□ -2.2
CCDC61Q9Y6R9 RNU6-863P-201ENST00000515989 104 ntBASIC1.31□□□□□ -2.2
CCDC61Q9Y6R9 CYP3A137P-201ENST00000562436 69 ntBASIC1.31□□□□□ -2.2
CCDC61Q9Y6R9 RNU6-133P-201ENST00000383989 107 ntBASIC1.3□□□□□ -2.2
CCDC61Q9Y6R9 MIR598-201ENST00000384868 97 ntBASIC1.3□□□□□ -2.2
CCDC61Q9Y6R9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.3□□□□□ -2.2
CCDC61Q9Y6R9 MIR1285-1-201ENST00000408593 84 ntBASIC1.3□□□□□ -2.2
CCDC61Q9Y6R9 RNA5SP436-201ENST00000516020 115 ntBASIC1.3□□□□□ -2.2
CCDC61Q9Y6R9 AC108740.1-201ENST00000498629 225 ntBASIC1.29□□□□□ -2.2
CCDC61Q9Y6R9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CCDC61Q9Y6R9 AC096531.1-201ENST00000419107 107 ntBASIC1.28□□□□□ -2.2
CCDC61Q9Y6R9 RNA5SP325-201ENST00000363756 130 ntBASIC1.27□□□□□ -2.21
CCDC61Q9Y6R9 SNORD114-26-201ENST00000363543 72 ntBASIC1.26□□□□□ -2.21
CCDC61Q9Y6R9 RNU6-900P-201ENST00000384498 102 ntBASIC1.26□□□□□ -2.21
CCDC61Q9Y6R9 RNU6-110P-201ENST00000384508 104 ntBASIC1.26□□□□□ -2.21
CCDC61Q9Y6R9 RNU6-258P-201ENST00000390884 101 ntBASIC1.26□□□□□ -2.21
CCDC61Q9Y6R9 RNY1P9-201ENST00000532431 109 ntBASIC1.26□□□□□ -2.21
CCDC61Q9Y6R9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC61Q9Y6R9 MIR6779-201ENST00000617283 64 ntBASIC1.24□□□□□ -2.21
CCDC61Q9Y6R9 uc_338.17-201ENST00000619633 179 ntBASIC1.24□□□□□ -2.21
CCDC61Q9Y6R9 MIR4698-201ENST00000577795 80 ntBASIC1.23□□□□□ -2.21
CCDC61Q9Y6R9 RNA5SP169-201ENST00000517268 117 ntBASIC1.22□□□□□ -2.21
CCDC61Q9Y6R9 RNU6-1233P-201ENST00000362922 102 ntBASIC1.2□□□□□ -2.22
CCDC61Q9Y6R9 RNU6-361P-201ENST00000364454 107 ntBASIC1.2□□□□□ -2.22
CCDC61Q9Y6R9 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
CCDC61Q9Y6R9 MIR520D-201ENST00000385002 87 ntBASIC1.19□□□□□ -2.22
CCDC61Q9Y6R9 RNU6-300P-201ENST00000459080 104 ntBASIC1.19□□□□□ -2.22
CCDC61Q9Y6R9 MIR6854-201ENST00000614935 69 ntBASIC1.18□□□□□ -2.22
CCDC61Q9Y6R9 RNU6-455P-201ENST00000384681 107 ntBASIC1.17□□□□□ -2.22
CCDC61Q9Y6R9 MIR124-2-201ENST00000385081 109 ntBASIC1.17□□□□□ -2.22
CCDC61Q9Y6R9 RNU6ATAC22P-201ENST00000516794 89 ntBASIC1.17□□□□□ -2.22
CCDC61Q9Y6R9 SNORD19-201ENST00000391191 68 ntBASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 SNORD111B-201ENST00000408587 80 ntBASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 RNU6-176P-201ENST00000517196 105 ntBASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 MIR5704-201ENST00000584029 77 ntBASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 AC103810.9-201ENST00000606688 112 ntBASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC61Q9Y6R9 MIR4714-201ENST00000580728 77 ntBASIC1.14□□□□□ -2.23
CCDC61Q9Y6R9 MIR202-201ENST00000362219 110 ntBASIC1.13□□□□□ -2.23
CCDC61Q9Y6R9 SNORA42.1-201ENST00000363515 137 ntBASIC1.13□□□□□ -2.23
CCDC61Q9Y6R9 MIR6514-201ENST00000622549 70 ntBASIC1.13□□□□□ -2.23
CCDC61Q9Y6R9 MIR8068-201ENST00000618032 68 ntBASIC1.12□□□□□ -2.23
CCDC61Q9Y6R9 SNORD44.1-201ENST00000363202 61 ntBASIC1.11□□□□□ -2.23
CCDC61Q9Y6R9 RNU6-901P-201ENST00000384593 106 ntBASIC1.11□□□□□ -2.23
CCDC61Q9Y6R9 SNORA17.4-201ENST00000391287 132 ntBASIC1.11□□□□□ -2.23
CCDC61Q9Y6R9 RNU6-485P-201ENST00000363475 107 ntBASIC1.1□□□□□ -2.23
CCDC61Q9Y6R9 RNU6-351P-201ENST00000516097 100 ntBASIC1.09□□□□□ -2.23
CCDC61Q9Y6R9 Y_RNA.374-201ENST00000365606 101 ntBASIC1.08□□□□□ -2.24
CCDC61Q9Y6R9 PSMC1P5-201ENST00000512850 177 ntBASIC1.08□□□□□ -2.24
CCDC61Q9Y6R9 CR383656.4-201ENST00000546909 122 ntBASIC1.08□□□□□ -2.24
CCDC61Q9Y6R9 RNU6-127P-201ENST00000390897 107 ntBASIC1.07□□□□□ -2.24
CCDC61Q9Y6R9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.06□□□□□ -2.24
CCDC61Q9Y6R9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.06□□□□□ -2.24
CCDC61Q9Y6R9 SNORD114-2-201ENST00000363953 78 ntBASIC1.05□□□□□ -2.24
CCDC61Q9Y6R9 RN7SL793P-201ENST00000583259 296 ntBASIC1.05□□□□□ -2.24
CCDC61Q9Y6R9 RNY3P8-201ENST00000411366 126 ntBASIC1.04□□□□□ -2.24
CCDC61Q9Y6R9 MIR6835-201ENST00000621552 64 ntBASIC1.04□□□□□ -2.24
CCDC61Q9Y6R9 MIR148A-201ENST00000362215 68 ntBASIC1.03□□□□□ -2.24
CCDC61Q9Y6R9 MIR6513-201ENST00000621188 64 ntBASIC1.03□□□□□ -2.24
CCDC61Q9Y6R9 MIR216A-201ENST00000385063 110 ntBASIC1.01□□□□□ -2.25
CCDC61Q9Y6R9 MIR5683-201ENST00000636514 76 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 212.8 ms