Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
USP3Q9Y6I4 Y_RNA.109-201ENST00000363215 102 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 RNU6-900P-201ENST00000384498 102 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 SNORD116.2-201ENST00000391251 93 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 RNA5SP193-201ENST00000410353 107 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 RNU7-55P-201ENST00000459426 62 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 MIR6514-201ENST00000622549 70 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 MIR7978-201ENST00000636158 59 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 MIR4315-1-201ENST00000636800 73 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 MIR4315-2-201ENST00000640925 73 ntBASIC0.52□□□□□ -2.33
USP3Q9Y6I4 RNU6-1312P-201ENST00000362425 108 ntBASIC0.51□□□□□ -2.33
USP3Q9Y6I4 RNU6-936P-201ENST00000384005 107 ntBASIC0.51□□□□□ -2.33
USP3Q9Y6I4 RNU6-1133P-201ENST00000410963 100 ntBASIC0.51□□□□□ -2.33
USP3Q9Y6I4 MIR4711-201ENST00000578274 70 ntBASIC0.51□□□□□ -2.33
USP3Q9Y6I4 SNORD1B-201ENST00000363091 84 ntBASIC0.5□□□□□ -2.33
USP3Q9Y6I4 RNU6-973P-201ENST00000364690 107 ntBASIC0.5□□□□□ -2.33
USP3Q9Y6I4 RNU6-180P-201ENST00000516697 61 ntBASIC0.5□□□□□ -2.33
USP3Q9Y6I4 MIR548AG1-201ENST00000579932 66 ntBASIC0.5□□□□□ -2.33
USP3Q9Y6I4 SNORA40B-201ENST00000385573 128 ntBASIC0.49□□□□□ -2.33
USP3Q9Y6I4 RNU6-172P-201ENST00000411000 93 ntBASIC0.49□□□□□ -2.33
USP3Q9Y6I4 AC108676.2-201ENST00000605225 163 ntBASIC0.49□□□□□ -2.33
USP3Q9Y6I4 AL391099.1-201ENST00000624635 187 ntBASIC0.49□□□□□ -2.33
USP3Q9Y6I4 MIR610-201ENST00000385139 96 ntBASIC0.48□□□□□ -2.33
USP3Q9Y6I4 MIR643-201ENST00000385267 97 ntBASIC0.47□□□□□ -2.33
USP3Q9Y6I4 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
USP3Q9Y6I4 RNA5SP163-201ENST00000410304 99 ntBASIC0.46□□□□□ -2.34
USP3Q9Y6I4 SNORA40.16-201ENST00000517238 121 ntBASIC0.46□□□□□ -2.34
USP3Q9Y6I4 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
USP3Q9Y6I4 RNU7-160P-201ENST00000516660 62 ntBASIC0.45□□□□□ -2.34
USP3Q9Y6I4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.44□□□□□ -2.34
USP3Q9Y6I4 Y_RNA.379-201ENST00000365653 102 ntBASIC0.44□□□□□ -2.34
USP3Q9Y6I4 AC096531.1-201ENST00000419107 107 ntBASIC0.44□□□□□ -2.34
USP3Q9Y6I4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.44□□□□□ -2.34
USP3Q9Y6I4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.43□□□□□ -2.34
USP3Q9Y6I4 MIR8087-201ENST00000612745 78 ntBASIC0.43□□□□□ -2.34
USP3Q9Y6I4 SNORA42.1-201ENST00000363515 137 ntBASIC0.42□□□□□ -2.34
USP3Q9Y6I4 RNU6-455P-201ENST00000384681 107 ntBASIC0.42□□□□□ -2.34
USP3Q9Y6I4 SNORA62.5-201ENST00000516634 120 ntBASIC0.42□□□□□ -2.34
USP3Q9Y6I4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
USP3Q9Y6I4 MIR330-201ENST00000362196 94 ntBASIC0.41□□□□□ -2.34
USP3Q9Y6I4 MIR548H2-201ENST00000408874 88 ntBASIC0.41□□□□□ -2.34
USP3Q9Y6I4 RNU6-810P-201ENST00000364001 107 ntBASIC0.4□□□□□ -2.35
USP3Q9Y6I4 RNU6-696P-201ENST00000390834 107 ntBASIC0.4□□□□□ -2.35
USP3Q9Y6I4 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.39□□□□□ -2.35
USP3Q9Y6I4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 RNU7-159P-201ENST00000459284 62 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 RNA5SP134-201ENST00000516492 96 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 Y_RNA.698-201ENST00000516798 118 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 MIR6507-201ENST00000613630 70 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 AL445584.3-201ENST00000617173 78 ntBASIC0.38□□□□□ -2.35
USP3Q9Y6I4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 RNU6-598P-201ENST00000364017 105 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 MIR548AA1-201ENST00000384971 97 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 RNU7-165P-201ENST00000458864 60 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 RNA5SP330-201ENST00000517096 96 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 MIR548X-201ENST00000580069 75 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 MIR4464-201ENST00000580818 92 ntBASIC0.37□□□□□ -2.35
USP3Q9Y6I4 RNU6-924P-201ENST00000362926 108 ntBASIC0.36□□□□□ -2.35
USP3Q9Y6I4 RNU6-995P-201ENST00000391244 107 ntBASIC0.36□□□□□ -2.35
USP3Q9Y6I4 MIR6888-201ENST00000621977 67 ntBASIC0.36□□□□□ -2.35
USP3Q9Y6I4 uc_338.36-201ENST00000622331 158 ntBASIC0.36□□□□□ -2.35
USP3Q9Y6I4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.35□□□□□ -2.35
USP3Q9Y6I4 RNA5SP257-201ENST00000363023 116 ntBASIC0.35□□□□□ -2.35
USP3Q9Y6I4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
USP3Q9Y6I4 RNU6-1262P-201ENST00000516217 96 ntBASIC0.35□□□□□ -2.35
USP3Q9Y6I4 RNU6-980P-201ENST00000516925 103 ntBASIC0.35□□□□□ -2.35
USP3Q9Y6I4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.35□□□□□ -2.35
USP3Q9Y6I4 AC104408.1-201ENST00000605241 170 ntBASIC0.34□□□□□ -2.36
USP3Q9Y6I4 RNU6-901P-201ENST00000384593 106 ntBASIC0.33□□□□□ -2.36
USP3Q9Y6I4 Y_RNA.613-201ENST00000410726 97 ntBASIC0.33□□□□□ -2.36
USP3Q9Y6I4 MIR593-201ENST00000384856 100 ntBASIC0.32□□□□□ -2.36
USP3Q9Y6I4 MIR145-201ENST00000384967 88 ntBASIC0.32□□□□□ -2.36
USP3Q9Y6I4 RNU4-33P-201ENST00000364316 85 ntBASIC0.31□□□□□ -2.36
USP3Q9Y6I4 RNU6-46P-201ENST00000383860 107 ntBASIC0.31□□□□□ -2.36
USP3Q9Y6I4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.31□□□□□ -2.36
USP3Q9Y6I4 MIR6854-201ENST00000614935 69 ntBASIC0.31□□□□□ -2.36
USP3Q9Y6I4 U2.18-201ENST00000622185 84 ntBASIC0.31□□□□□ -2.36
USP3Q9Y6I4 RNA5SP214-201ENST00000363378 118 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 MIR1197-201ENST00000408818 88 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 SNORD57-201ENST00000448188 72 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 RNU7-151P-201ENST00000516930 53 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 MIR4490-201ENST00000582647 84 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.3□□□□□ -2.36
USP3Q9Y6I4 AC244250.2-201ENST00000418731 148 ntBASIC0.29□□□□□ -2.36
USP3Q9Y6I4 RNU6-1206P-201ENST00000516339 103 ntBASIC0.29□□□□□ -2.36
USP3Q9Y6I4 RNU6-419P-201ENST00000517030 63 ntBASIC0.29□□□□□ -2.36
USP3Q9Y6I4 U7.5-201ENST00000517224 61 ntBASIC0.29□□□□□ -2.36
USP3Q9Y6I4 RNU6-753P-201ENST00000363926 107 ntBASIC0.28□□□□□ -2.36
USP3Q9Y6I4 RNA5SP63-201ENST00000391225 112 ntBASIC0.28□□□□□ -2.36
USP3Q9Y6I4 AC104692.1-201ENST00000472406 90 ntBASIC0.28□□□□□ -2.36
USP3Q9Y6I4 SNORD63.1-201ENST00000516178 80 ntBASIC0.28□□□□□ -2.36
USP3Q9Y6I4 AC023932.2-201ENST00000603176 175 ntBASIC0.28□□□□□ -2.36
USP3Q9Y6I4 RNU6-828P-201ENST00000364876 107 ntBASIC0.27□□□□□ -2.37
USP3Q9Y6I4 RNU6-1174P-201ENST00000517278 101 ntBASIC0.27□□□□□ -2.37
USP3Q9Y6I4 Y_RNA.69-201ENST00000362885 109 ntBASIC0.26□□□□□ -2.37
USP3Q9Y6I4 SNORD114-9-201ENST00000364370 72 ntBASIC0.26□□□□□ -2.37
USP3Q9Y6I4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.25□□□□□ -2.37
USP3Q9Y6I4 MIR579-201ENST00000385221 98 ntBASIC0.24□□□□□ -2.37
USP3Q9Y6I4 MIR125B1-201ENST00000385236 88 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 233.7 ms