Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 VTRNA1-3-201ENST00000365645 89 ntBASIC0.27□□□□□ -2.37
UBE3DQ7Z6J8 RNU6-455P-201ENST00000384681 107 ntBASIC0.27□□□□□ -2.37
UBE3DQ7Z6J8 AC104408.1-201ENST00000605241 170 ntBASIC0.27□□□□□ -2.37
UBE3DQ7Z6J8 MIR6515-201ENST00000619843 57 ntBASIC0.27□□□□□ -2.37
UBE3DQ7Z6J8 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
UBE3DQ7Z6J8 SNORD114-26-201ENST00000363543 72 ntBASIC0.26□□□□□ -2.37
UBE3DQ7Z6J8 AC108676.2-201ENST00000605225 163 ntBASIC0.26□□□□□ -2.37
UBE3DQ7Z6J8 MIR6507-201ENST00000613630 70 ntBASIC0.26□□□□□ -2.37
UBE3DQ7Z6J8 MIR145-201ENST00000384967 88 ntBASIC0.25□□□□□ -2.37
UBE3DQ7Z6J8 MIR548AG1-201ENST00000579932 66 ntBASIC0.25□□□□□ -2.37
UBE3DQ7Z6J8 MIR7110-201ENST00000612638 86 ntBASIC0.25□□□□□ -2.37
UBE3DQ7Z6J8 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.25□□□□□ -2.37
UBE3DQ7Z6J8 Y_RNA.109-201ENST00000363215 102 ntBASIC0.24□□□□□ -2.37
UBE3DQ7Z6J8 RNA5SP214-201ENST00000363378 118 ntBASIC0.24□□□□□ -2.37
UBE3DQ7Z6J8 RNU6-46P-201ENST00000383860 107 ntBASIC0.24□□□□□ -2.37
UBE3DQ7Z6J8 MIR593-201ENST00000384856 100 ntBASIC0.24□□□□□ -2.37
UBE3DQ7Z6J8 SNORD1B-201ENST00000363091 84 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 SNORD114-9-201ENST00000364370 72 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 MIR598-201ENST00000384868 97 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 RNU6-141P-201ENST00000410499 105 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 AC104692.1-201ENST00000472406 90 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
UBE3DQ7Z6J8 snoU13.18-201ENST00000459483 104 ntBASIC0.2□□□□□ -2.38
UBE3DQ7Z6J8 PVT1_3.1-201ENST00000620853 95 ntBASIC0.2□□□□□ -2.38
UBE3DQ7Z6J8 AC244250.2-201ENST00000418731 148 ntBASIC0.19□□□□□ -2.38
UBE3DQ7Z6J8 Y_RNA.698-201ENST00000516798 118 ntBASIC0.19□□□□□ -2.38
UBE3DQ7Z6J8 MIR4464-201ENST00000580818 92 ntBASIC0.19□□□□□ -2.38
UBE3DQ7Z6J8 AL445584.3-201ENST00000617173 78 ntBASIC0.18□□□□□ -2.38
UBE3DQ7Z6J8 RNU6-901P-201ENST00000384593 106 ntBASIC0.17□□□□□ -2.38
UBE3DQ7Z6J8 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
UBE3DQ7Z6J8 RNU6-172P-201ENST00000411000 93 ntBASIC0.17□□□□□ -2.38
UBE3DQ7Z6J8 MIR6888-201ENST00000621977 67 ntBASIC0.17□□□□□ -2.38
UBE3DQ7Z6J8 uc_338.36-201ENST00000622331 158 ntBASIC0.17□□□□□ -2.38
UBE3DQ7Z6J8 RNU6-696P-201ENST00000390834 107 ntBASIC0.16□□□□□ -2.38
UBE3DQ7Z6J8 SNORD116.2-201ENST00000391251 93 ntBASIC0.16□□□□□ -2.38
UBE3DQ7Z6J8 RNU6-924P-201ENST00000362926 108 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 SNORD114-23-201ENST00000363536 72 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 MIR489-201ENST00000384923 84 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 SNORA40B-201ENST00000385573 128 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 RNU6-808P-201ENST00000391233 108 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 RNU7-160P-201ENST00000516660 62 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 MIR6854-201ENST00000614935 69 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 MIR924-201ENST00000638017 53 ntBASIC0.15□□□□□ -2.39
UBE3DQ7Z6J8 SNORD113-4-201ENST00000364802 75 ntBASIC0.14□□□□□ -2.39
UBE3DQ7Z6J8 SNORA40.16-201ENST00000517238 121 ntBASIC0.14□□□□□ -2.39
UBE3DQ7Z6J8 MIR1295B-201ENST00000636144 60 ntBASIC0.14□□□□□ -2.39
UBE3DQ7Z6J8 MIR655-201ENST00000362159 97 ntBASIC0.13□□□□□ -2.39
UBE3DQ7Z6J8 SNORD114-5-201ENST00000362928 70 ntBASIC0.13□□□□□ -2.39
UBE3DQ7Z6J8 Y_RNA.722-201ENST00000517279 114 ntBASIC0.13□□□□□ -2.39
UBE3DQ7Z6J8 MIR4290-201ENST00000583807 95 ntBASIC0.13□□□□□ -2.39
UBE3DQ7Z6J8 SNORD56B-201ENST00000384713 71 ntBASIC0.12□□□□□ -2.39
UBE3DQ7Z6J8 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
UBE3DQ7Z6J8 Y_RNA.613-201ENST00000410726 97 ntBASIC0.12□□□□□ -2.39
UBE3DQ7Z6J8 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.12□□□□□ -2.39
UBE3DQ7Z6J8 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.12□□□□□ -2.39
UBE3DQ7Z6J8 RNU6-598P-201ENST00000364017 105 ntBASIC0.11□□□□□ -2.39
UBE3DQ7Z6J8 SNORD49B-201ENST00000365172 72 ntBASIC0.11□□□□□ -2.39
UBE3DQ7Z6J8 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
UBE3DQ7Z6J8 RNU6-1312P-201ENST00000362425 108 ntBASIC0.1□□□□□ -2.39
UBE3DQ7Z6J8 MIR548AA1-201ENST00000384971 97 ntBASIC0.1□□□□□ -2.39
UBE3DQ7Z6J8 RNU6-1262P-201ENST00000516217 96 ntBASIC0.1□□□□□ -2.39
UBE3DQ7Z6J8 AC010487.4-201ENST00000637027 61 ntBASIC0.1□□□□□ -2.39
UBE3DQ7Z6J8 RN7SL793P-201ENST00000583259 296 ntBASIC0.09□□□□□ -2.4
UBE3DQ7Z6J8 RNU6-929P-201ENST00000384429 107 ntBASIC0.08□□□□□ -2.4
UBE3DQ7Z6J8 MIR4514-201ENST00000581410 57 ntBASIC0.08□□□□□ -2.4
UBE3DQ7Z6J8 Y_RNA.118-201ENST00000363300 101 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 RNU6-810P-201ENST00000364001 107 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 RNU6-995P-201ENST00000391244 107 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 SNORD57-201ENST00000448188 72 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 U7.5-201ENST00000517224 61 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 MIR5704-201ENST00000584029 77 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 MIR4263-201ENST00000584745 83 ntBASIC0.07□□□□□ -2.4
UBE3DQ7Z6J8 SNORA18.1-201ENST00000363418 128 ntBASIC0.06□□□□□ -2.4
UBE3DQ7Z6J8 SNORD63.1-201ENST00000516178 80 ntBASIC0.06□□□□□ -2.4
UBE3DQ7Z6J8 SNORD74.6-201ENST00000364796 70 ntBASIC0.05□□□□□ -2.4
UBE3DQ7Z6J8 RNU6-1174P-201ENST00000517278 101 ntBASIC0.05□□□□□ -2.4
UBE3DQ7Z6J8 U2.18-201ENST00000622185 84 ntBASIC0.05□□□□□ -2.4
UBE3DQ7Z6J8 MIR7978-201ENST00000636158 59 ntBASIC0.05□□□□□ -2.4
UBE3DQ7Z6J8 RNU6-936P-201ENST00000384005 107 ntBASIC0.04□□□□□ -2.4
UBE3DQ7Z6J8 AC114755.3-201ENST00000481111 251 ntBASIC0.04□□□□□ -2.4
UBE3DQ7Z6J8 MIR4280-201ENST00000582178 76 ntBASIC0.04□□□□□ -2.4
UBE3DQ7Z6J8 RNU7-151P-201ENST00000516930 53 ntBASIC0.03□□□□□ -2.4
UBE3DQ7Z6J8 RNA5SP66-201ENST00000517178 101 ntBASIC0.03□□□□□ -2.4
UBE3DQ7Z6J8 AC023932.2-201ENST00000603176 175 ntBASIC0.03□□□□□ -2.4
UBE3DQ7Z6J8 MIR6851-201ENST00000617060 67 ntBASIC0.03□□□□□ -2.4
UBE3DQ7Z6J8 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
UBE3DQ7Z6J8 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
UBE3DQ7Z6J8 MIR3666-201ENST00000607845 111 ntBASIC0.02□□□□□ -2.41
UBE3DQ7Z6J8 MIR8068-201ENST00000618032 68 ntBASIC0.02□□□□□ -2.41
UBE3DQ7Z6J8 SNORA13-201ENST00000458790 133 ntBASIC0.01□□□□□ -2.41
UBE3DQ7Z6J8 MIR548X-201ENST00000580069 75 ntBASIC0.01□□□□□ -2.41
UBE3DQ7Z6J8 RNU7-88P-201ENST00000458752 63 ntBASIC0□□□□□ -2.41
UBE3DQ7Z6J8 SNORA62.5-201ENST00000516634 120 ntBASIC0□□□□□ -2.41
UBE3DQ7Z6J8 MIR4490-201ENST00000582647 84 ntBASIC0□□□□□ -2.41
UBE3DQ7Z6J8 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
UBE3DQ7Z6J8 AC093726.3-201ENST00000637588 150 ntBASIC0□□□□□ -2.41
UBE3DQ7Z6J8 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.01□□□□□ -2.41
UBE3DQ7Z6J8 MIR125B1-201ENST00000385236 88 ntBASIC-0.01□□□□□ -2.41
UBE3DQ7Z6J8 AL445193.1-201ENST00000441183 141 ntBASIC-0.01□□□□□ -2.41
UBE3DQ7Z6J8 RNU6-732P-201ENST00000516033 103 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 202.5 ms