Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIR6129-201ENST00000616087 109 ntBASIC-1.44□□□□□ -2.64
RFX3P48380 MIR365A-201ENST00000362260 87 ntBASIC-1.45□□□□□ -2.64
RFX3P48380 RNU6-604P-201ENST00000390917 100 ntBASIC-1.45□□□□□ -2.64
RFX3P48380 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.45□□□□□ -2.64
RFX3P48380 AC008267.6-201ENST00000441664 139 ntBASIC-1.45□□□□□ -2.64
RFX3P48380 RNU7-174P-201ENST00000516248 59 ntBASIC-1.45□□□□□ -2.64
RFX3P48380 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.46□□□□□ -2.64
RFX3P48380 MTATP8P2-201ENST00000435212 202 ntBASIC-1.46□□□□□ -2.64
RFX3P48380 MIR4668-201ENST00000582284 70 ntBASIC-1.46□□□□□ -2.64
RFX3P48380 RNU6-633P-201ENST00000362612 103 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 SNORA8.1-201ENST00000384250 140 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 MIR5591-201ENST00000578248 65 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 MIR3133-201ENST00000583157 78 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 MIR6502-201ENST00000617296 76 ntBASIC-1.47□□□□□ -2.64
RFX3P48380 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.48□□□□□ -2.65
RFX3P48380 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.48□□□□□ -2.65
RFX3P48380 RNU6-959P-201ENST00000384671 107 ntBASIC-1.48□□□□□ -2.65
RFX3P48380 RNU6-168P-201ENST00000516189 101 ntBASIC-1.48□□□□□ -2.65
RFX3P48380 RNU6-624P-201ENST00000363411 107 ntBASIC-1.49□□□□□ -2.65
RFX3P48380 SNORD115-37-201ENST00000363768 82 ntBASIC-1.49□□□□□ -2.65
RFX3P48380 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.49□□□□□ -2.65
RFX3P48380 MIR520D-201ENST00000385002 87 ntBASIC-1.49□□□□□ -2.65
RFX3P48380 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.49□□□□□ -2.65
RFX3P48380 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
RFX3P48380 RNU6-766P-201ENST00000362478 107 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 RNU6-696P-201ENST00000390834 107 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 RNU6-630P-201ENST00000391258 106 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 RNU6-267P-201ENST00000516714 103 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 MIR4441-201ENST00000582623 100 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 AL365222.1-201ENST00000614661 98 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 U4.4-201ENST00000620626 117 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 MIR2052-201ENST00000636055 55 ntBASIC-1.5□□□□□ -2.65
RFX3P48380 RNU6-834P-201ENST00000362367 110 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-598P-201ENST00000364017 105 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-608P-201ENST00000383927 104 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-209P-201ENST00000384118 107 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 MIR4770-201ENST00000579149 58 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 MIR3675-201ENST00000583661 73 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 MIR1246-201ENST00000636535 73 ntBASIC-1.51□□□□□ -2.65
RFX3P48380 RNU6-219P-201ENST00000364728 107 ntBASIC-1.52□□□□□ -2.65
RFX3P48380 RNU6-587P-201ENST00000391282 106 ntBASIC-1.52□□□□□ -2.65
RFX3P48380 AC093729.1-201ENST00000513074 128 ntBASIC-1.52□□□□□ -2.65
RFX3P48380 U2.18-201ENST00000622185 84 ntBASIC-1.52□□□□□ -2.65
RFX3P48380 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.52□□□□□ -2.65
RFX3P48380 RNU6-402P-201ENST00000410678 103 ntBASIC-1.53□□□□□ -2.65
RFX3P48380 RNU6-589P-201ENST00000516485 107 ntBASIC-1.53□□□□□ -2.65
RFX3P48380 MIR450A1-201ENST00000362262 91 ntBASIC-1.54□□□□□ -2.66
RFX3P48380 SNORD45.1-201ENST00000363181 77 ntBASIC-1.54□□□□□ -2.66
RFX3P48380 RNU6-303P-201ENST00000517091 106 ntBASIC-1.54□□□□□ -2.66
RFX3P48380 MIR4484-201ENST00000582855 83 ntBASIC-1.54□□□□□ -2.66
RFX3P48380 MIR548V-201ENST00000584165 80 ntBASIC-1.54□□□□□ -2.66
RFX3P48380 RNU6-497P-201ENST00000365316 104 ntBASIC-1.55□□□□□ -2.66
RFX3P48380 AC018880.2-201ENST00000414265 201 ntBASIC-1.55□□□□□ -2.66
RFX3P48380 MIR548BB-201ENST00000626714 66 ntBASIC-1.55□□□□□ -2.66
RFX3P48380 RNU6-81P-201ENST00000365608 104 ntBASIC-1.56□□□□□ -2.66
RFX3P48380 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.56□□□□□ -2.66
RFX3P48380 AC074348.1-201ENST00000426503 132 ntBASIC-1.56□□□□□ -2.66
RFX3P48380 RNU6-698P-201ENST00000363523 107 ntBASIC-1.57□□□□□ -2.66
RFX3P48380 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.57□□□□□ -2.66
RFX3P48380 RNU6-34P-201ENST00000364874 107 ntBASIC-1.57□□□□□ -2.66
RFX3P48380 SNORD114-3-201ENST00000364969 75 ntBASIC-1.57□□□□□ -2.66
RFX3P48380 RNU6-557P-201ENST00000516842 110 ntBASIC-1.57□□□□□ -2.66
RFX3P48380 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.58□□□□□ -2.66
RFX3P48380 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.58□□□□□ -2.66
RFX3P48380 RNU6-686P-201ENST00000364839 107 ntBASIC-1.58□□□□□ -2.66
RFX3P48380 MIR630-201ENST00000384957 97 ntBASIC-1.58□□□□□ -2.66
RFX3P48380 MALAT1.1-201ENST00000618249 95 ntBASIC-1.58□□□□□ -2.66
RFX3P48380 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.59□□□□□ -2.66
RFX3P48380 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.59□□□□□ -2.66
RFX3P48380 MIR1207-201ENST00000408249 87 ntBASIC-1.59□□□□□ -2.66
RFX3P48380 RNU6-79P-201ENST00000362511 107 ntBASIC-1.6□□□□□ -2.67
RFX3P48380 SNORD116-22-201ENST00000384430 92 ntBASIC-1.6□□□□□ -2.67
RFX3P48380 RNA5SP86-201ENST00000390869 98 ntBASIC-1.6□□□□□ -2.67
RFX3P48380 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.6□□□□□ -2.67
RFX3P48380 MIR429-201ENST00000362106 83 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 SNORD113-2-201ENST00000391082 72 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 RNU6-400P-201ENST00000391173 106 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 AL031737.1-201ENST00000450125 223 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 MIR664A-201ENST00000626086 82 ntBASIC-1.62□□□□□ -2.67
RFX3P48380 RNU6-563P-201ENST00000364872 108 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 MIR488-201ENST00000365739 83 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 RNU6-540P-201ENST00000384622 101 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 MIR487B-201ENST00000385021 84 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 RNU6-258P-201ENST00000390884 101 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 RNU6-129P-201ENST00000391022 107 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.63□□□□□ -2.67
RFX3P48380 AP001318.4-201ENST00000616637 121 ntBASIC-1.63□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 223.2 ms