Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC018880.2-201ENST00000414265 201 ntBASIC-1.69□□□□□ -2.68
USF1P22415 U6.58-201ENST00000613107 107 ntBASIC-1.69□□□□□ -2.68
USF1P22415 RNU7-174P-201ENST00000516248 59 ntBASIC-1.7□□□□□ -2.68
USF1P22415 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.71□□□□□ -2.68
USF1P22415 RNU6-696P-201ENST00000390834 107 ntBASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.71□□□□□ -2.68
USF1P22415 RNU6-162P-201ENST00000516228 103 ntBASIC-1.71□□□□□ -2.68
USF1P22415 U7.3-201ENST00000616123 62 ntBASIC-1.71□□□□□ -2.68
USF1P22415 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.71□□□□□ -2.68
USF1P22415 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.72□□□□□ -2.68
USF1P22415 RNU6-608P-201ENST00000383927 104 ntBASIC-1.72□□□□□ -2.68
USF1P22415 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.72□□□□□ -2.68
USF1P22415 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.73□□□□□ -2.69
USF1P22415 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.73□□□□□ -2.69
USF1P22415 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.73□□□□□ -2.69
USF1P22415 MIR519C-201ENST00000385053 87 ntBASIC-1.73□□□□□ -2.69
USF1P22415 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.73□□□□□ -2.69
USF1P22415 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.74□□□□□ -2.69
USF1P22415 SNORD116-21-201ENST00000384507 92 ntBASIC-1.74□□□□□ -2.69
USF1P22415 MIR520D-201ENST00000385002 87 ntBASIC-1.74□□□□□ -2.69
USF1P22415 RNU6-695P-201ENST00000391157 104 ntBASIC-1.74□□□□□ -2.69
USF1P22415 RNU6-630P-201ENST00000391258 106 ntBASIC-1.74□□□□□ -2.69
USF1P22415 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.74□□□□□ -2.69
USF1P22415 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.75□□□□□ -2.69
USF1P22415 MIR548C-201ENST00000384815 97 ntBASIC-1.75□□□□□ -2.69
USF1P22415 RNU6-587P-201ENST00000391282 106 ntBASIC-1.75□□□□□ -2.69
USF1P22415 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.75□□□□□ -2.69
USF1P22415 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.76□□□□□ -2.69
USF1P22415 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.76□□□□□ -2.69
USF1P22415 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.76□□□□□ -2.69
USF1P22415 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.76□□□□□ -2.69
USF1P22415 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.76□□□□□ -2.69
USF1P22415 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.76□□□□□ -2.69
USF1P22415 MTATP8P2-201ENST00000435212 202 ntBASIC-1.76□□□□□ -2.69
USF1P22415 RNU6-346P-201ENST00000516288 111 ntBASIC-1.76□□□□□ -2.69
USF1P22415 RNU6-109P-201ENST00000516364 107 ntBASIC-1.76□□□□□ -2.69
USF1P22415 RNU6-184P-201ENST00000516514 107 ntBASIC-1.76□□□□□ -2.69
USF1P22415 RNU6-980P-201ENST00000516925 103 ntBASIC-1.76□□□□□ -2.69
USF1P22415 RNU6-624P-201ENST00000363411 107 ntBASIC-1.77□□□□□ -2.69
USF1P22415 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.77□□□□□ -2.69
USF1P22415 RNU6-330P-201ENST00000363015 107 ntBASIC-1.78□□□□□ -2.69
USF1P22415 RNU6-598P-201ENST00000364017 105 ntBASIC-1.78□□□□□ -2.69
USF1P22415 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.78□□□□□ -2.69
USF1P22415 RNY1P5-201ENST00000383890 115 ntBASIC-1.78□□□□□ -2.69
USF1P22415 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.78□□□□□ -2.69
USF1P22415 MIR1302-5-201ENST00000408164 150 ntBASIC-1.78□□□□□ -2.69
USF1P22415 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.78□□□□□ -2.69
USF1P22415 MIR3123-201ENST00000583417 75 ntBASIC-1.78□□□□□ -2.69
USF1P22415 MIR548AM-201ENST00000584298 74 ntBASIC-1.78□□□□□ -2.69
USF1P22415 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.78□□□□□ -2.69
USF1P22415 RNU6-119P-201ENST00000364882 107 ntBASIC-1.79□□□□□ -2.7
USF1P22415 RNU6-118P-201ENST00000516552 102 ntBASIC-1.79□□□□□ -2.7
USF1P22415 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.79□□□□□ -2.7
USF1P22415 U4.4-201ENST00000620626 117 ntBASIC-1.79□□□□□ -2.7
USF1P22415 RNU6-633P-201ENST00000362612 103 ntBASIC-1.8□□□□□ -2.7
USF1P22415 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.8□□□□□ -2.7
USF1P22415 RNU6-841P-201ENST00000383872 107 ntBASIC-1.8□□□□□ -2.7
USF1P22415 MIR496-201ENST00000385226 102 ntBASIC-1.8□□□□□ -2.7
USF1P22415 RNU4-88P-201ENST00000411220 86 ntBASIC-1.8□□□□□ -2.7
USF1P22415 MIR429-201ENST00000362106 83 ntBASIC-1.81□□□□□ -2.7
USF1P22415 RNA5SP405-201ENST00000363059 114 ntBASIC-1.81□□□□□ -2.7
USF1P22415 SNORD116-14-201ENST00000383894 92 ntBASIC-1.81□□□□□ -2.7
USF1P22415 SNORD116-17-201ENST00000383929 92 ntBASIC-1.81□□□□□ -2.7
USF1P22415 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.81□□□□□ -2.7
USF1P22415 SNORD116-15-201ENST00000384445 92 ntBASIC-1.81□□□□□ -2.7
USF1P22415 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.81□□□□□ -2.7
USF1P22415 SNORD116-19-201ENST00000384729 92 ntBASIC-1.81□□□□□ -2.7
USF1P22415 RNU6-554P-201ENST00000410466 106 ntBASIC-1.81□□□□□ -2.7
USF1P22415 RNU6-982P-201ENST00000516216 102 ntBASIC-1.81□□□□□ -2.7
USF1P22415 RNU6-255P-201ENST00000516957 105 ntBASIC-1.81□□□□□ -2.7
USF1P22415 MIR3675-201ENST00000583661 73 ntBASIC-1.81□□□□□ -2.7
USF1P22415 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.81□□□□□ -2.7
USF1P22415 RNU6-698P-201ENST00000363523 107 ntBASIC-1.82□□□□□ -2.7
USF1P22415 RNU6-563P-201ENST00000364872 108 ntBASIC-1.82□□□□□ -2.7
USF1P22415 RNU6-34P-201ENST00000364874 107 ntBASIC-1.82□□□□□ -2.7
USF1P22415 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.82□□□□□ -2.7
USF1P22415 RNU6-106P-201ENST00000384405 107 ntBASIC-1.82□□□□□ -2.7
USF1P22415 RNU6-604P-201ENST00000390917 100 ntBASIC-1.82□□□□□ -2.7
USF1P22415 RNU6-303P-201ENST00000517091 106 ntBASIC-1.83□□□□□ -2.7
USF1P22415 MIR3139-201ENST00000579145 76 ntBASIC-1.83□□□□□ -2.7
USF1P22415 MIR23C-201ENST00000579846 100 ntBASIC-1.83□□□□□ -2.7
USF1P22415 U2.18-201ENST00000622185 84 ntBASIC-1.83□□□□□ -2.7
USF1P22415 SNORD115-37-201ENST00000363768 82 ntBASIC-1.84□□□□□ -2.7
USF1P22415 SNORA8.1-201ENST00000384250 140 ntBASIC-1.84□□□□□ -2.7
USF1P22415 AC074348.1-201ENST00000426503 132 ntBASIC-1.84□□□□□ -2.7
USF1P22415 SNORA19-201ENST00000384737 128 ntBASIC-1.85□□□□□ -2.71
USF1P22415 RNU6-557P-201ENST00000516842 110 ntBASIC-1.85□□□□□ -2.71
USF1P22415 MIR4668-201ENST00000582284 70 ntBASIC-1.85□□□□□ -2.71
USF1P22415 MIR548V-201ENST00000584165 80 ntBASIC-1.85□□□□□ -2.71
USF1P22415 RNU6-194P-201ENST00000363862 105 ntBASIC-1.86□□□□□ -2.71
USF1P22415 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.86□□□□□ -2.71
USF1P22415 AC093729.1-201ENST00000513074 128 ntBASIC-1.86□□□□□ -2.71
USF1P22415 AC120024.2-201ENST00000576526 175 ntBASIC-1.86□□□□□ -2.71
USF1P22415 RNU6-497P-201ENST00000365316 104 ntBASIC-1.87□□□□□ -2.71
USF1P22415 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.87□□□□□ -2.71
USF1P22415 MIR3170-201ENST00000582699 77 ntBASIC-1.87□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms