Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-573P-201ENST00000383938 106 ntBASIC-0.55□□□□□ -2.5
MSH3P20585 MIR1265-201ENST00000408444 86 ntBASIC-0.55□□□□□ -2.5
MSH3P20585 MIR4493-201ENST00000584016 73 ntBASIC-0.55□□□□□ -2.5
MSH3P20585 MIR101-1-201ENST00000362265 75 ntBASIC-0.56□□□□□ -2.5
MSH3P20585 SNORD114-14-201ENST00000362723 75 ntBASIC-0.56□□□□□ -2.5
MSH3P20585 MIR1302-4-201ENST00000408701 150 ntBASIC-0.56□□□□□ -2.5
MSH3P20585 RNU6-758P-201ENST00000516292 89 ntBASIC-0.56□□□□□ -2.5
MSH3P20585 MIR6888-201ENST00000621977 67 ntBASIC-0.56□□□□□ -2.5
MSH3P20585 SNORD113.1-201ENST00000363280 73 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 SNORA32.3-201ENST00000384772 121 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 SNORD22.1-201ENST00000516331 125 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 RNU6-70P-201ENST00000516438 60 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 MIR548AZ-201ENST00000616567 95 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 AL445584.3-201ENST00000617173 78 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.57□□□□□ -2.5
MSH3P20585 SNORD45A-201ENST00000384512 84 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR604-201ENST00000384880 94 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 RNA5SP451-201ENST00000410588 110 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 AC021146.6-201ENST00000514659 117 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR3179-1-201ENST00000578940 84 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR3179-2-201ENST00000579107 84 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR3179-3-201ENST00000579566 84 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR3179-4-201ENST00000617599 84 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 MIR4679-1-201ENST00000637619 75 ntBASIC-0.58□□□□□ -2.5
MSH3P20585 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.59□□□□□ -2.5
MSH3P20585 MIR548C-201ENST00000384815 97 ntBASIC-0.59□□□□□ -2.5
MSH3P20585 MIR124-2-201ENST00000385081 109 ntBASIC-0.59□□□□□ -2.5
MSH3P20585 MTND4LP1-201ENST00000446263 157 ntBASIC-0.59□□□□□ -2.5
MSH3P20585 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.59□□□□□ -2.5
MSH3P20585 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.6□□□□□ -2.51
MSH3P20585 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.6□□□□□ -2.51
MSH3P20585 SNORA3B-201ENST00000391305 131 ntBASIC-0.6□□□□□ -2.51
MSH3P20585 MIR3134-201ENST00000579433 74 ntBASIC-0.6□□□□□ -2.51
MSH3P20585 RNU6-228P-201ENST00000362700 106 ntBASIC-0.61□□□□□ -2.51
MSH3P20585 RNA5SP368-201ENST00000364298 116 ntBASIC-0.61□□□□□ -2.51
MSH3P20585 SNORD75.1-201ENST00000408373 60 ntBASIC-0.61□□□□□ -2.51
MSH3P20585 RNU6-721P-201ENST00000410155 105 ntBASIC-0.61□□□□□ -2.51
MSH3P20585 RNU7-174P-201ENST00000516248 59 ntBASIC-0.61□□□□□ -2.51
MSH3P20585 RNU6-587P-201ENST00000391282 106 ntBASIC-0.62□□□□□ -2.51
MSH3P20585 RPS29P8-201ENST00000445109 171 ntBASIC-0.62□□□□□ -2.51
MSH3P20585 AC108676.2-201ENST00000605225 163 ntBASIC-0.62□□□□□ -2.51
MSH3P20585 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 RNU6-668P-201ENST00000364180 107 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 MIR517B-201ENST00000385102 67 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 MIR154-201ENST00000385243 84 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 MIR1255A-201ENST00000408338 113 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 SNORD18.2-201ENST00000459604 70 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 MIR548AG1-201ENST00000579932 66 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 MIR4436A-201ENST00000585278 85 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 U7.4-201ENST00000614961 63 ntBASIC-0.63□□□□□ -2.51
MSH3P20585 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.64□□□□□ -2.51
MSH3P20585 AP000533.3-201ENST00000447704 118 ntBASIC-0.64□□□□□ -2.51
MSH3P20585 RNU6-687P-201ENST00000516443 89 ntBASIC-0.64□□□□□ -2.51
MSH3P20585 MIR6086-201ENST00000638065 55 ntBASIC-0.64□□□□□ -2.51
MSH3P20585 RNU6-924P-201ENST00000362926 108 ntBASIC-0.65□□□□□ -2.51
MSH3P20585 SNORD78.1-201ENST00000390866 65 ntBASIC-0.65□□□□□ -2.51
MSH3P20585 RNU6-279P-201ENST00000391297 101 ntBASIC-0.65□□□□□ -2.51
MSH3P20585 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.66□□□□□ -2.52
MSH3P20585 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.66□□□□□ -2.52
MSH3P20585 RNU6-24P-201ENST00000384440 107 ntBASIC-0.66□□□□□ -2.52
MSH3P20585 RNU6-411P-201ENST00000384451 107 ntBASIC-0.66□□□□□ -2.52
MSH3P20585 MIR224-201ENST00000384889 81 ntBASIC-0.66□□□□□ -2.52
MSH3P20585 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 RNA5SP215-201ENST00000363440 122 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 RNU6-698P-201ENST00000363523 107 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 RNU6-34P-201ENST00000364874 107 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 SNORD115-31-201ENST00000365318 82 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 RNA5SP25-201ENST00000410815 110 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 RNU6-857P-201ENST00000515893 110 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.67□□□□□ -2.52
MSH3P20585 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.68□□□□□ -2.52
MSH3P20585 RNU6-895P-201ENST00000384125 103 ntBASIC-0.68□□□□□ -2.52
MSH3P20585 SNORD116-24-201ENST00000384549 92 ntBASIC-0.69□□□□□ -2.52
MSH3P20585 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.7□□□□□ -2.52
MSH3P20585 U4.4-201ENST00000620626 117 ntBASIC-0.7□□□□□ -2.52
MSH3P20585 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.71□□□□□ -2.52
MSH3P20585 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.71□□□□□ -2.52
MSH3P20585 MIR548V-201ENST00000584165 80 ntBASIC-0.71□□□□□ -2.52
MSH3P20585 RNU6-246P-201ENST00000384702 107 ntBASIC-0.72□□□□□ -2.52
MSH3P20585 RNU4-63P-201ENST00000411313 118 ntBASIC-0.72□□□□□ -2.52
MSH3P20585 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.73□□□□□ -2.53
MSH3P20585 RNA5SP225-201ENST00000410874 135 ntBASIC-0.73□□□□□ -2.53
MSH3P20585 MIR3681-201ENST00000580089 72 ntBASIC-0.73□□□□□ -2.53
MSH3P20585 SNORD114-15-201ENST00000364687 72 ntBASIC-0.74□□□□□ -2.53
MSH3P20585 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.74□□□□□ -2.53
MSH3P20585 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.74□□□□□ -2.53
MSH3P20585 MIR630-201ENST00000384957 97 ntBASIC-0.74□□□□□ -2.53
MSH3P20585 SNORD114-17-201ENST00000364699 75 ntBASIC-0.75□□□□□ -2.53
MSH3P20585 RNU6-634P-201ENST00000459134 106 ntBASIC-0.75□□□□□ -2.53
MSH3P20585 SNORD95.1-201ENST00000364099 68 ntBASIC-0.76□□□□□ -2.53
MSH3P20585 SNORD113-2-201ENST00000391082 72 ntBASIC-0.76□□□□□ -2.53
MSH3P20585 RNU6-523P-201ENST00000516304 54 ntBASIC-0.76□□□□□ -2.53
MSH3P20585 RNU6-458P-201ENST00000384179 107 ntBASIC-0.77□□□□□ -2.53
MSH3P20585 MIR527-201ENST00000385244 85 ntBASIC-0.77□□□□□ -2.53
MSH3P20585 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.77□□□□□ -2.53
MSH3P20585 U6.58-201ENST00000613107 107 ntBASIC-0.77□□□□□ -2.53
MSH3P20585 snoU13.19-201ENST00000459148 104 ntBASIC-0.78□□□□□ -2.53
MSH3P20585 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 181.6 ms