Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 SCARNA11.2-201ENST00000517183 154 ntBASIC0.43□□□□□ -2.34
TRIM38O00635 AP000676.1-201ENST00000533307 52 ntBASIC0.43□□□□□ -2.34
TRIM38O00635 MIR7110-201ENST00000612638 86 ntBASIC0.43□□□□□ -2.34
TRIM38O00635 U6.58-201ENST00000613107 107 ntBASIC0.43□□□□□ -2.34
TRIM38O00635 MIR106A-201ENST00000384870 81 ntBASIC0.42□□□□□ -2.34
TRIM38O00635 AL353803.5-201ENST00000599815 141 ntBASIC0.42□□□□□ -2.34
TRIM38O00635 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
TRIM38O00635 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
TRIM38O00635 Y_RNA.379-201ENST00000365653 102 ntBASIC0.41□□□□□ -2.34
TRIM38O00635 SNORA40B-201ENST00000385573 128 ntBASIC0.41□□□□□ -2.34
TRIM38O00635 Y_RNA.698-201ENST00000516798 118 ntBASIC0.41□□□□□ -2.34
TRIM38O00635 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.41□□□□□ -2.34
TRIM38O00635 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.41□□□□□ -2.34
TRIM38O00635 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.41□□□□□ -2.34
TRIM38O00635 RNU6-753P-201ENST00000363926 107 ntBASIC0.4□□□□□ -2.35
TRIM38O00635 RNU6-598P-201ENST00000364017 105 ntBASIC0.4□□□□□ -2.35
TRIM38O00635 RNU6-127P-201ENST00000390897 107 ntBASIC0.4□□□□□ -2.35
TRIM38O00635 U2.18-201ENST00000622185 84 ntBASIC0.4□□□□□ -2.35
TRIM38O00635 SNORA62.5-201ENST00000516634 120 ntBASIC0.39□□□□□ -2.35
TRIM38O00635 MIR4490-201ENST00000582647 84 ntBASIC0.39□□□□□ -2.35
TRIM38O00635 RNU6-815P-201ENST00000384080 113 ntBASIC0.38□□□□□ -2.35
TRIM38O00635 RNU6-35P-201ENST00000384530 107 ntBASIC0.38□□□□□ -2.35
TRIM38O00635 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.38□□□□□ -2.35
TRIM38O00635 MIR4464-201ENST00000580818 92 ntBASIC0.38□□□□□ -2.35
TRIM38O00635 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.38□□□□□ -2.35
TRIM38O00635 RNU4-33P-201ENST00000364316 85 ntBASIC0.37□□□□□ -2.35
TRIM38O00635 MIR579-201ENST00000385221 98 ntBASIC0.37□□□□□ -2.35
TRIM38O00635 MIR548H2-201ENST00000408874 88 ntBASIC0.37□□□□□ -2.35
TRIM38O00635 MIR4432-201ENST00000581823 84 ntBASIC0.37□□□□□ -2.35
TRIM38O00635 MIR2909-201ENST00000617113 69 ntBASIC0.37□□□□□ -2.35
TRIM38O00635 RNA5SP98-201ENST00000363158 137 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 MIR548X-201ENST00000580069 75 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 MIR4514-201ENST00000581410 57 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 AC108676.2-201ENST00000605225 163 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 MIR6888-201ENST00000621977 67 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 uc_338.36-201ENST00000622331 158 ntBASIC0.36□□□□□ -2.35
TRIM38O00635 MIR429-201ENST00000362106 83 ntBASIC0.35□□□□□ -2.35
TRIM38O00635 RNA5SP62-201ENST00000363457 110 ntBASIC0.35□□□□□ -2.35
TRIM38O00635 MIR643-201ENST00000385267 97 ntBASIC0.35□□□□□ -2.35
TRIM38O00635 AC108740.1-201ENST00000498629 225 ntBASIC0.35□□□□□ -2.35
TRIM38O00635 AC023932.2-201ENST00000603176 175 ntBASIC0.35□□□□□ -2.35
TRIM38O00635 RNU7-55P-201ENST00000459426 62 ntBASIC0.34□□□□□ -2.36
TRIM38O00635 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
TRIM38O00635 RNU7-151P-201ENST00000516930 53 ntBASIC0.34□□□□□ -2.36
TRIM38O00635 RNU6-924P-201ENST00000362926 108 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 RNA5SP257-201ENST00000363023 116 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 RNU6-1262P-201ENST00000516217 96 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 AL445584.3-201ENST00000617173 78 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 MIR6514-201ENST00000622549 70 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 AL391099.1-201ENST00000624635 187 ntBASIC0.33□□□□□ -2.36
TRIM38O00635 RNU7-88P-201ENST00000458752 63 ntBASIC0.32□□□□□ -2.36
TRIM38O00635 U7.5-201ENST00000517224 61 ntBASIC0.32□□□□□ -2.36
TRIM38O00635 AC069113.3-201ENST00000521019 150 ntBASIC0.32□□□□□ -2.36
TRIM38O00635 MIR6507-201ENST00000613630 70 ntBASIC0.32□□□□□ -2.36
TRIM38O00635 snoR1.1-201ENST00000628177 80 ntBASIC0.32□□□□□ -2.36
TRIM38O00635 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.31□□□□□ -2.36
TRIM38O00635 RNU6-419P-201ENST00000517030 63 ntBASIC0.31□□□□□ -2.36
TRIM38O00635 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.31□□□□□ -2.36
TRIM38O00635 Y_RNA.69-201ENST00000362885 109 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 RNU6-973P-201ENST00000364690 107 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 RNU6-696P-201ENST00000390834 107 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 RNA5SP163-201ENST00000410304 99 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 AC096531.1-201ENST00000419107 107 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 MIR5704-201ENST00000584029 77 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 MIR8068-201ENST00000618032 68 ntBASIC0.3□□□□□ -2.36
TRIM38O00635 RNU6-900P-201ENST00000384498 102 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 RNU6-455P-201ENST00000384681 107 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 RNA5SP63-201ENST00000391225 112 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 MIR548F3-201ENST00000408509 87 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 RNU6-1267P-201ENST00000410747 107 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 SNORD57-201ENST00000448188 72 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 RNU6-180P-201ENST00000516697 61 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 RNU6-1174P-201ENST00000517278 101 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 CR383656.4-201ENST00000546909 122 ntBASIC0.29□□□□□ -2.36
TRIM38O00635 MIR125B1-201ENST00000385236 88 ntBASIC0.28□□□□□ -2.36
TRIM38O00635 RNU6-930P-201ENST00000390938 100 ntBASIC0.28□□□□□ -2.36
TRIM38O00635 RNU6-1133P-201ENST00000410963 100 ntBASIC0.28□□□□□ -2.36
TRIM38O00635 RNU6-1206P-201ENST00000516339 103 ntBASIC0.28□□□□□ -2.36
TRIM38O00635 MIR548AA1-201ENST00000384971 97 ntBASIC0.27□□□□□ -2.37
TRIM38O00635 RNU7-160P-201ENST00000516660 62 ntBASIC0.27□□□□□ -2.37
TRIM38O00635 MIR4315-1-201ENST00000636800 73 ntBASIC0.27□□□□□ -2.37
TRIM38O00635 MIR4315-2-201ENST00000640925 73 ntBASIC0.27□□□□□ -2.37
TRIM38O00635 SNORA62.4-201ENST00000365504 151 ntBASIC0.26□□□□□ -2.37
TRIM38O00635 SNORD56B-201ENST00000384713 71 ntBASIC0.26□□□□□ -2.37
TRIM38O00635 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.26□□□□□ -2.37
TRIM38O00635 MIR6718-201ENST00000616153 80 ntBASIC0.26□□□□□ -2.37
TRIM38O00635 MIR148A-201ENST00000362215 68 ntBASIC0.25□□□□□ -2.37
TRIM38O00635 RNU6-974P-201ENST00000384099 108 ntBASIC0.25□□□□□ -2.37
TRIM38O00635 MIR593-201ENST00000384856 100 ntBASIC0.25□□□□□ -2.37
TRIM38O00635 AC244250.2-201ENST00000418731 148 ntBASIC0.25□□□□□ -2.37
TRIM38O00635 MTRNR2L9-201ENST00000622562 75 ntBASIC0.25□□□□□ -2.37
TRIM38O00635 Y_RNA.68-201ENST00000362881 102 ntBASIC0.24□□□□□ -2.37
TRIM38O00635 Y_RNA.139-201ENST00000363464 102 ntBASIC0.24□□□□□ -2.37
TRIM38O00635 MIR655-201ENST00000362159 97 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 RNU6-838P-201ENST00000363399 108 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 MIR329-2-201ENST00000385029 84 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 RNU6-995P-201ENST00000391244 107 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 AC114755.3-201ENST00000481111 251 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 SNORD63.1-201ENST00000516178 80 ntBASIC0.23□□□□□ -2.37
TRIM38O00635 AC104408.1-201ENST00000605241 170 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 221.8 ms