Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-1079P-201ENST00000362861 110 ntBASIC0.75□□□□□ -2.29
CHMP3Q9Y3E7 MIR1255B2-201ENST00000408618 67 ntBASIC0.75□□□□□ -2.29
CHMP3Q9Y3E7 RNU6-518P-201ENST00000516056 96 ntBASIC0.75□□□□□ -2.29
CHMP3Q9Y3E7 MIR6773-201ENST00000612812 74 ntBASIC0.75□□□□□ -2.29
CHMP3Q9Y3E7 AC243829.3-201ENST00000622177 108 ntBASIC0.75□□□□□ -2.29
CHMP3Q9Y3E7 SNORA9.1-201ENST00000362412 131 ntBASIC0.74□□□□□ -2.29
CHMP3Q9Y3E7 SNORD60.1-201ENST00000362451 73 ntBASIC0.74□□□□□ -2.29
CHMP3Q9Y3E7 RNA5SP347-201ENST00000362445 119 ntBASIC0.73□□□□□ -2.29
CHMP3Q9Y3E7 RNU6-940P-201ENST00000363433 104 ntBASIC0.73□□□□□ -2.29
CHMP3Q9Y3E7 Y_RNA.325-201ENST00000365171 122 ntBASIC0.73□□□□□ -2.29
CHMP3Q9Y3E7 SNORD113-2-201ENST00000391082 72 ntBASIC0.73□□□□□ -2.29
CHMP3Q9Y3E7 RNU6-122P-201ENST00000516818 107 ntBASIC0.72□□□□□ -2.29
CHMP3Q9Y3E7 RNA5SP499-201ENST00000363982 119 ntBASIC0.71□□□□□ -2.3
CHMP3Q9Y3E7 Y_RNA.246-201ENST00000364495 108 ntBASIC0.71□□□□□ -2.3
CHMP3Q9Y3E7 MIR876-201ENST00000401147 81 ntBASIC0.71□□□□□ -2.3
CHMP3Q9Y3E7 MTND4LP19-201ENST00000403051 166 ntBASIC0.71□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-863P-201ENST00000515989 104 ntBASIC0.71□□□□□ -2.3
CHMP3Q9Y3E7 MIR519A2-201ENST00000384990 87 ntBASIC0.7□□□□□ -2.3
CHMP3Q9Y3E7 MIR216A-201ENST00000385063 110 ntBASIC0.7□□□□□ -2.3
CHMP3Q9Y3E7 AC079150.2-201ENST00000443733 78 ntBASIC0.7□□□□□ -2.3
CHMP3Q9Y3E7 SCARNA11.2-201ENST00000517183 154 ntBASIC0.7□□□□□ -2.3
CHMP3Q9Y3E7 MIRLET7D-201ENST00000362263 87 ntBASIC0.69□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-815P-201ENST00000384080 113 ntBASIC0.69□□□□□ -2.3
CHMP3Q9Y3E7 MIR92A1-201ENST00000385233 78 ntBASIC0.69□□□□□ -2.3
CHMP3Q9Y3E7 MIR936-201ENST00000401264 98 ntBASIC0.69□□□□□ -2.3
CHMP3Q9Y3E7 SNORD2-201ENST00000459163 69 ntBASIC0.69□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-502P-201ENST00000362419 108 ntBASIC0.68□□□□□ -2.3
CHMP3Q9Y3E7 AL021921.1-201ENST00000442774 93 ntBASIC0.68□□□□□ -2.3
CHMP3Q9Y3E7 RNA5SP480-201ENST00000516840 109 ntBASIC0.68□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-829P-201ENST00000363700 112 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 SNORA41B-201ENST00000384785 128 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 MIRLET7B-201ENST00000385140 83 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 MIR548AG1-201ENST00000579932 66 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 uc_338.17-201ENST00000619633 179 ntBASIC0.67□□□□□ -2.3
CHMP3Q9Y3E7 Y_RNA.540-201ENST00000384638 111 ntBASIC0.66□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-127P-201ENST00000390897 107 ntBASIC0.66□□□□□ -2.3
CHMP3Q9Y3E7 RNU6-782P-201ENST00000516852 104 ntBASIC0.66□□□□□ -2.3
CHMP3Q9Y3E7 SNORD115-25-201ENST00000362619 82 ntBASIC0.65□□□□□ -2.31
CHMP3Q9Y3E7 RN7SL793P-201ENST00000583259 296 ntBASIC0.65□□□□□ -2.31
CHMP3Q9Y3E7 AP000676.1-201ENST00000533307 52 ntBASIC0.64□□□□□ -2.31
CHMP3Q9Y3E7 RNU6-446P-201ENST00000362827 106 ntBASIC0.63□□□□□ -2.31
CHMP3Q9Y3E7 MIR643-201ENST00000385267 97 ntBASIC0.63□□□□□ -2.31
CHMP3Q9Y3E7 MIR4711-201ENST00000578274 70 ntBASIC0.63□□□□□ -2.31
CHMP3Q9Y3E7 MIR3938-201ENST00000582157 103 ntBASIC0.63□□□□□ -2.31
CHMP3Q9Y3E7 MIR5087-201ENST00000635826 76 ntBASIC0.63□□□□□ -2.31
CHMP3Q9Y3E7 RNA5SP193-201ENST00000410353 107 ntBASIC0.62□□□□□ -2.31
CHMP3Q9Y3E7 RNA5SP62-201ENST00000363457 110 ntBASIC0.61□□□□□ -2.31
CHMP3Q9Y3E7 AC114737.2-201ENST00000421583 173 ntBASIC0.61□□□□□ -2.31
CHMP3Q9Y3E7 Y_RNA.74-201ENST00000362911 99 ntBASIC0.58□□□□□ -2.32
CHMP3Q9Y3E7 SNORD114-26-201ENST00000363543 72 ntBASIC0.58□□□□□ -2.32
CHMP3Q9Y3E7 MIR106A-201ENST00000384870 81 ntBASIC0.58□□□□□ -2.32
CHMP3Q9Y3E7 SNORD114-23-201ENST00000363536 72 ntBASIC0.57□□□□□ -2.32
CHMP3Q9Y3E7 Y_RNA.282-201ENST00000364793 102 ntBASIC0.57□□□□□ -2.32
CHMP3Q9Y3E7 AC069113.3-201ENST00000521019 150 ntBASIC0.57□□□□□ -2.32
CHMP3Q9Y3E7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
CHMP3Q9Y3E7 Y_RNA.236-201ENST00000364427 111 ntBASIC0.56□□□□□ -2.32
CHMP3Q9Y3E7 MIR527-201ENST00000385244 85 ntBASIC0.56□□□□□ -2.32
CHMP3Q9Y3E7 AC108740.1-201ENST00000498629 225 ntBASIC0.56□□□□□ -2.32
CHMP3Q9Y3E7 RNU7-154P-201ENST00000516194 62 ntBASIC0.56□□□□□ -2.32
CHMP3Q9Y3E7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CHMP3Q9Y3E7 MIR548H2-201ENST00000408874 88 ntBASIC0.54□□□□□ -2.32
CHMP3Q9Y3E7 MIR6779-201ENST00000617283 64 ntBASIC0.54□□□□□ -2.32
CHMP3Q9Y3E7 RNA5SP98-201ENST00000363158 137 ntBASIC0.53□□□□□ -2.32
CHMP3Q9Y3E7 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.53□□□□□ -2.32
CHMP3Q9Y3E7 RNA5SP470-201ENST00000516463 106 ntBASIC0.53□□□□□ -2.32
CHMP3Q9Y3E7 MIR6514-201ENST00000622549 70 ntBASIC0.53□□□□□ -2.32
CHMP3Q9Y3E7 SNORD113-4-201ENST00000364802 75 ntBASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 RNU6-614P-201ENST00000384369 107 ntBASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 SNORD116-16-201ENST00000384533 92 ntBASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 U6.59-201ENST00000615686 107 ntBASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
CHMP3Q9Y3E7 SNORD115-23-201ENST00000364461 82 ntBASIC0.51□□□□□ -2.33
CHMP3Q9Y3E7 RNU6-987P-201ENST00000384759 104 ntBASIC0.51□□□□□ -2.33
CHMP3Q9Y3E7 AL353803.5-201ENST00000599815 141 ntBASIC0.51□□□□□ -2.33
CHMP3Q9Y3E7 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.51□□□□□ -2.33
CHMP3Q9Y3E7 RNA5SP325-201ENST00000363756 130 ntBASIC0.5□□□□□ -2.33
CHMP3Q9Y3E7 MIR193B-201ENST00000384907 83 ntBASIC0.5□□□□□ -2.33
CHMP3Q9Y3E7 RNU4-37P-201ENST00000410214 84 ntBASIC0.5□□□□□ -2.33
CHMP3Q9Y3E7 RNA5SP163-201ENST00000410304 99 ntBASIC0.5□□□□□ -2.33
CHMP3Q9Y3E7 uc_338.36-201ENST00000622331 158 ntBASIC0.5□□□□□ -2.33
CHMP3Q9Y3E7 AC010487.4-201ENST00000637027 61 ntBASIC0.48□□□□□ -2.33
CHMP3Q9Y3E7 Y_RNA.109-201ENST00000363215 102 ntBASIC0.47□□□□□ -2.33
CHMP3Q9Y3E7 VTRNA1-3-201ENST00000365645 89 ntBASIC0.47□□□□□ -2.33
CHMP3Q9Y3E7 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.47□□□□□ -2.33
CHMP3Q9Y3E7 RNU6-1327P-201ENST00000365302 105 ntBASIC0.46□□□□□ -2.34
CHMP3Q9Y3E7 RNU6-231P-201ENST00000517122 103 ntBASIC0.46□□□□□ -2.34
CHMP3Q9Y3E7 snoR1.1-201ENST00000628177 80 ntBASIC0.45□□□□□ -2.34
CHMP3Q9Y3E7 RNU6-458P-201ENST00000384179 107 ntBASIC0.44□□□□□ -2.34
CHMP3Q9Y3E7 MIR593-201ENST00000384856 100 ntBASIC0.44□□□□□ -2.34
CHMP3Q9Y3E7 MIR1273G-201ENST00000577677 100 ntBASIC0.44□□□□□ -2.34
CHMP3Q9Y3E7 U6.58-201ENST00000613107 107 ntBASIC0.44□□□□□ -2.34
CHMP3Q9Y3E7 AC090625.1-201ENST00000357130 210 ntBASIC0.43□□□□□ -2.34
CHMP3Q9Y3E7 RNU6-1312P-201ENST00000362425 108 ntBASIC0.43□□□□□ -2.34
CHMP3Q9Y3E7 MIR4432-201ENST00000581823 84 ntBASIC0.43□□□□□ -2.34
CHMP3Q9Y3E7 SNORD1B-201ENST00000363091 84 ntBASIC0.42□□□□□ -2.34
CHMP3Q9Y3E7 RNU6-180P-201ENST00000516697 61 ntBASIC0.42□□□□□ -2.34
CHMP3Q9Y3E7 CR383656.4-201ENST00000546909 122 ntBASIC0.42□□□□□ -2.34
CHMP3Q9Y3E7 MIR6507-201ENST00000613630 70 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 254.6 ms