Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-752P-201ENST00000516376 102 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 RNU7-153P-201ENST00000516455 62 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.29□□□□□ -2.62
VPS28Q9UK41 MIR519C-201ENST00000385053 87 ntBASIC-1.3□□□□□ -2.62
VPS28Q9UK41 AL353803.5-201ENST00000599815 141 ntBASIC-1.3□□□□□ -2.62
VPS28Q9UK41 MIR409-201ENST00000362237 79 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 AL031737.1-201ENST00000450125 223 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 SNORD18.2-201ENST00000459604 70 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 MIR3115-201ENST00000577915 68 ntBASIC-1.31□□□□□ -2.62
VPS28Q9UK41 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.32□□□□□ -2.62
VPS28Q9UK41 AC132825.6-201ENST00000638861 357 ntBASIC-1.32□□□□□ -2.62
VPS28Q9UK41 RNU6-681P-201ENST00000364012 104 ntBASIC-1.33□□□□□ -2.62
VPS28Q9UK41 RNA5SP192-201ENST00000364404 120 ntBASIC-1.33□□□□□ -2.62
VPS28Q9UK41 SNORD115-27-201ENST00000364430 82 ntBASIC-1.34□□□□□ -2.62
VPS28Q9UK41 MIR1255B2-201ENST00000408618 67 ntBASIC-1.34□□□□□ -2.62
VPS28Q9UK41 SNORD57-201ENST00000448188 72 ntBASIC-1.34□□□□□ -2.62
VPS28Q9UK41 RNY1P9-201ENST00000532431 109 ntBASIC-1.34□□□□□ -2.62
VPS28Q9UK41 SNORD115-37-201ENST00000363768 82 ntBASIC-1.35□□□□□ -2.63
VPS28Q9UK41 MIR124-2-201ENST00000385081 109 ntBASIC-1.35□□□□□ -2.63
VPS28Q9UK41 SNORD77.2-201ENST00000391045 68 ntBASIC-1.35□□□□□ -2.63
VPS28Q9UK41 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.36□□□□□ -2.63
VPS28Q9UK41 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.36□□□□□ -2.63
VPS28Q9UK41 MIR521-2-201ENST00000384818 87 ntBASIC-1.36□□□□□ -2.63
VPS28Q9UK41 CYP3A54P-201ENST00000566950 75 ntBASIC-1.36□□□□□ -2.63
VPS28Q9UK41 RNU6-340P-201ENST00000364005 107 ntBASIC-1.37□□□□□ -2.63
VPS28Q9UK41 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.37□□□□□ -2.63
VPS28Q9UK41 MIR3910-1-201ENST00000580936 111 ntBASIC-1.37□□□□□ -2.63
VPS28Q9UK41 MIR4306-201ENST00000583390 91 ntBASIC-1.37□□□□□ -2.63
VPS28Q9UK41 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
VPS28Q9UK41 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.38□□□□□ -2.63
VPS28Q9UK41 RNU2-51P-201ENST00000410708 197 ntBASIC-1.38□□□□□ -2.63
VPS28Q9UK41 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
VPS28Q9UK41 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.39□□□□□ -2.63
VPS28Q9UK41 MIR6739-201ENST00000622461 75 ntBASIC-1.39□□□□□ -2.63
VPS28Q9UK41 MIR450A1-201ENST00000362262 91 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 RNU6-633P-201ENST00000362612 103 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 SCARNA18B-201ENST00000458806 135 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 MIR3165-201ENST00000579874 75 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 MIR4464-201ENST00000580818 92 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 MIR4668-201ENST00000582284 70 ntBASIC-1.4□□□□□ -2.63
VPS28Q9UK41 MIR4320-201ENST00000636981 65 ntBASIC-1.41□□□□□ -2.64
VPS28Q9UK41 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.42□□□□□ -2.64
VPS28Q9UK41 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.42□□□□□ -2.64
VPS28Q9UK41 RNA5SP266-201ENST00000410273 108 ntBASIC-1.42□□□□□ -2.64
VPS28Q9UK41 AL445584.3-201ENST00000617173 78 ntBASIC-1.42□□□□□ -2.64
VPS28Q9UK41 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.42□□□□□ -2.64
VPS28Q9UK41 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.43□□□□□ -2.64
VPS28Q9UK41 MIR6888-201ENST00000621977 67 ntBASIC-1.43□□□□□ -2.64
VPS28Q9UK41 RNU7-154P-201ENST00000516194 62 ntBASIC-1.44□□□□□ -2.64
VPS28Q9UK41 SNORA40.13-201ENST00000516379 120 ntBASIC-1.44□□□□□ -2.64
VPS28Q9UK41 RNY4P18-201ENST00000391107 89 ntBASIC-1.45□□□□□ -2.64
VPS28Q9UK41 AC140658.3-201ENST00000567603 271 ntBASIC-1.45□□□□□ -2.64
VPS28Q9UK41 SNORD116-22-201ENST00000384430 92 ntBASIC-1.46□□□□□ -2.64
VPS28Q9UK41 AL035461.1-201ENST00000421490 332 ntBASIC-1.46□□□□□ -2.64
VPS28Q9UK41 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.46□□□□□ -2.64
VPS28Q9UK41 AP001318.4-201ENST00000616637 121 ntBASIC-1.46□□□□□ -2.64
VPS28Q9UK41 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.47□□□□□ -2.64
VPS28Q9UK41 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.47□□□□□ -2.64
VPS28Q9UK41 AC093729.1-201ENST00000513074 128 ntBASIC-1.47□□□□□ -2.64
VPS28Q9UK41 RNA5SP461-201ENST00000516451 104 ntBASIC-1.47□□□□□ -2.64
VPS28Q9UK41 RNU6-924P-201ENST00000362926 108 ntBASIC-1.48□□□□□ -2.65
VPS28Q9UK41 SNORD114-17-201ENST00000364699 75 ntBASIC-1.48□□□□□ -2.65
VPS28Q9UK41 SNORD113-1-201ENST00000365321 69 ntBASIC-1.48□□□□□ -2.65
VPS28Q9UK41 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.48□□□□□ -2.65
VPS28Q9UK41 MALAT1.1-201ENST00000618249 95 ntBASIC-1.48□□□□□ -2.65
VPS28Q9UK41 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.49□□□□□ -2.65
VPS28Q9UK41 MIR147A-201ENST00000385079 72 ntBASIC-1.5□□□□□ -2.65
VPS28Q9UK41 RNU6-624P-201ENST00000363411 107 ntBASIC-1.51□□□□□ -2.65
VPS28Q9UK41 RNU6-518P-201ENST00000516056 96 ntBASIC-1.51□□□□□ -2.65
VPS28Q9UK41 RNU6-706P-201ENST00000517229 104 ntBASIC-1.51□□□□□ -2.65
VPS28Q9UK41 AL627230.5-201ENST00000619807 58 ntBASIC-1.51□□□□□ -2.65
VPS28Q9UK41 RNU6-755P-201ENST00000364400 103 ntBASIC-1.52□□□□□ -2.65
VPS28Q9UK41 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.52□□□□□ -2.65
VPS28Q9UK41 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.52□□□□□ -2.65
VPS28Q9UK41 AL021921.1-201ENST00000442774 93 ntBASIC-1.52□□□□□ -2.65
VPS28Q9UK41 MIR519A2-201ENST00000384990 87 ntBASIC-1.53□□□□□ -2.65
VPS28Q9UK41 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.53□□□□□ -2.65
VPS28Q9UK41 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.54□□□□□ -2.66
VPS28Q9UK41 RNA5SP331-201ENST00000364986 107 ntBASIC-1.54□□□□□ -2.66
VPS28Q9UK41 RNU6-431P-201ENST00000383874 107 ntBASIC-1.54□□□□□ -2.66
VPS28Q9UK41 SNORD64-201ENST00000386683 67 ntBASIC-1.54□□□□□ -2.66
VPS28Q9UK41 RNU6-219P-201ENST00000364728 107 ntBASIC-1.55□□□□□ -2.66
VPS28Q9UK41 RNU6-32P-201ENST00000383948 107 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 RNU6-13P-201ENST00000384248 107 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 RNU6-12P-201ENST00000384604 107 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 RNU6-41P-201ENST00000384741 107 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.56□□□□□ -2.66
VPS28Q9UK41 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 MIR382-201ENST00000637119 76 ntBASIC-1.56□□□□□ -2.66
VPS28Q9UK41 RNU6-402P-201ENST00000410678 103 ntBASIC-1.57□□□□□ -2.66
VPS28Q9UK41 RNU6-557P-201ENST00000516842 110 ntBASIC-1.57□□□□□ -2.66
VPS28Q9UK41 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.59□□□□□ -2.66
VPS28Q9UK41 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.59□□□□□ -2.66
VPS28Q9UK41 RNU6-656P-201ENST00000516785 107 ntBASIC-1.59□□□□□ -2.66
VPS28Q9UK41 snoU83B.1-201ENST00000517136 88 ntBASIC-1.59□□□□□ -2.66
VPS28Q9UK41 MIR548BB-201ENST00000626714 66 ntBASIC-1.59□□□□□ -2.66
VPS28Q9UK41 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.6□□□□□ -2.67
VPS28Q9UK41 AL603908.1-201ENST00000406098 201 ntBASIC-1.6□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms