Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 Y_RNA.246-201ENST00000364495 108 ntBASIC0.77□□□□□ -2.29
USP40Q9NVE5 MIR501-201ENST00000390204 84 ntBASIC0.77□□□□□ -2.29
USP40Q9NVE5 RNU7-188P-201ENST00000517063 64 ntBASIC0.77□□□□□ -2.29
USP40Q9NVE5 MIR5706-201ENST00000579841 80 ntBASIC0.77□□□□□ -2.29
USP40Q9NVE5 U6.96-201ENST00000636425 70 ntBASIC0.77□□□□□ -2.29
USP40Q9NVE5 AC244090.1-201ENST00000441884 93 ntBASIC0.76□□□□□ -2.29
USP40Q9NVE5 AC243829.6-201ENST00000612652 106 ntBASIC0.76□□□□□ -2.29
USP40Q9NVE5 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.76□□□□□ -2.29
USP40Q9NVE5 RNA5SP347-201ENST00000362445 119 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 RNA5SP457-201ENST00000363657 124 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 MIR519A2-201ENST00000384990 87 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 MIR1255B2-201ENST00000408618 67 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 RNU6-518P-201ENST00000516056 96 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 MIR4677-201ENST00000584153 80 ntBASIC0.75□□□□□ -2.29
USP40Q9NVE5 MIR20A-201ENST00000362279 71 ntBASIC0.74□□□□□ -2.29
USP40Q9NVE5 RNU6-1312P-201ENST00000362425 108 ntBASIC0.74□□□□□ -2.29
USP40Q9NVE5 Y_RNA.30-201ENST00000362572 97 ntBASIC0.74□□□□□ -2.29
USP40Q9NVE5 SNORA40.8-201ENST00000411034 126 ntBASIC0.74□□□□□ -2.29
USP40Q9NVE5 MIR924-201ENST00000638017 53 ntBASIC0.74□□□□□ -2.29
USP40Q9NVE5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
USP40Q9NVE5 RNA5SP499-201ENST00000363982 119 ntBASIC0.73□□□□□ -2.29
USP40Q9NVE5 RNA5SP193-201ENST00000410353 107 ntBASIC0.73□□□□□ -2.29
USP40Q9NVE5 AC098934.3-201ENST00000430450 190 ntBASIC0.73□□□□□ -2.29
USP40Q9NVE5 MIR4711-201ENST00000578274 70 ntBASIC0.73□□□□□ -2.29
USP40Q9NVE5 MIR6773-201ENST00000612812 74 ntBASIC0.73□□□□□ -2.29
USP40Q9NVE5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
USP40Q9NVE5 RNU6-936P-201ENST00000384005 107 ntBASIC0.72□□□□□ -2.29
USP40Q9NVE5 MIR518A1-201ENST00000385068 85 ntBASIC0.72□□□□□ -2.29
USP40Q9NVE5 RNU6-229P-201ENST00000516614 102 ntBASIC0.72□□□□□ -2.29
USP40Q9NVE5 RN7SL660P-201ENST00000614852 299 ntBASIC0.72□□□□□ -2.29
USP40Q9NVE5 Y_RNA.282-201ENST00000364793 102 ntBASIC0.71□□□□□ -2.3
USP40Q9NVE5 SNORA2A-201ENST00000383885 135 ntBASIC0.71□□□□□ -2.3
USP40Q9NVE5 MIR548AD-201ENST00000584780 82 ntBASIC0.71□□□□□ -2.3
USP40Q9NVE5 Y_RNA.115-201ENST00000363272 98 ntBASIC0.7□□□□□ -2.3
USP40Q9NVE5 RNU6-1184P-201ENST00000384588 108 ntBASIC0.7□□□□□ -2.3
USP40Q9NVE5 AL021921.1-201ENST00000442774 93 ntBASIC0.7□□□□□ -2.3
USP40Q9NVE5 MIR3925-201ENST00000584674 77 ntBASIC0.7□□□□□ -2.3
USP40Q9NVE5 RNU6-502P-201ENST00000362419 108 ntBASIC0.69□□□□□ -2.3
USP40Q9NVE5 Y_RNA.74-201ENST00000362911 99 ntBASIC0.69□□□□□ -2.3
USP40Q9NVE5 SNORD116-16-201ENST00000384533 92 ntBASIC0.69□□□□□ -2.3
USP40Q9NVE5 Y_RNA.722-201ENST00000517279 114 ntBASIC0.69□□□□□ -2.3
USP40Q9NVE5 SNORD114-29-201ENST00000364819 70 ntBASIC0.68□□□□□ -2.3
USP40Q9NVE5 MIRLET7B-201ENST00000385140 83 ntBASIC0.68□□□□□ -2.3
USP40Q9NVE5 MIR760-201ENST00000390220 80 ntBASIC0.68□□□□□ -2.3
USP40Q9NVE5 RNU6-231P-201ENST00000517122 103 ntBASIC0.68□□□□□ -2.3
USP40Q9NVE5 SNORD115-25-201ENST00000362619 82 ntBASIC0.67□□□□□ -2.3
USP40Q9NVE5 RNU6-945P-201ENST00000383947 107 ntBASIC0.67□□□□□ -2.3
USP40Q9NVE5 RNU6-1036P-201ENST00000383959 104 ntBASIC0.67□□□□□ -2.3
USP40Q9NVE5 RNA5SP330-201ENST00000517096 96 ntBASIC0.67□□□□□ -2.3
USP40Q9NVE5 MIR499B-201ENST00000636498 73 ntBASIC0.67□□□□□ -2.3
USP40Q9NVE5 MIR876-201ENST00000401147 81 ntBASIC0.65□□□□□ -2.31
USP40Q9NVE5 SNORD71-201ENST00000411292 86 ntBASIC0.65□□□□□ -2.31
USP40Q9NVE5 SNORA40.16-201ENST00000517238 121 ntBASIC0.65□□□□□ -2.31
USP40Q9NVE5 RNA5SP128-201ENST00000365305 116 ntBASIC0.64□□□□□ -2.31
USP40Q9NVE5 RNU6-782P-201ENST00000516852 104 ntBASIC0.64□□□□□ -2.31
USP40Q9NVE5 MIR8087-201ENST00000612745 78 ntBASIC0.64□□□□□ -2.31
USP40Q9NVE5 MIR5087-201ENST00000635826 76 ntBASIC0.64□□□□□ -2.31
USP40Q9NVE5 SNORD1B-201ENST00000363091 84 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 SNORD44.1-201ENST00000363202 61 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 Y_RNA.109-201ENST00000363215 102 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 RNU6-520P-201ENST00000384717 104 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 MIR527-201ENST00000385244 85 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 RNU6-863P-201ENST00000515989 104 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 RNU7-154P-201ENST00000516194 62 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 RNA5SP121-201ENST00000516537 101 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 U7.6-201ENST00000610841 64 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 AC084368.1-201ENST00000620935 65 ntBASIC0.63□□□□□ -2.31
USP40Q9NVE5 MIR330-201ENST00000362196 94 ntBASIC0.62□□□□□ -2.31
USP40Q9NVE5 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
USP40Q9NVE5 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.62□□□□□ -2.31
USP40Q9NVE5 SNORA68.3-201ENST00000515906 83 ntBASIC0.62□□□□□ -2.31
USP40Q9NVE5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.61□□□□□ -2.31
USP40Q9NVE5 RNU6-848P-201ENST00000515948 107 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 RNU6-617P-201ENST00000516147 107 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 RNU6-473P-201ENST00000516164 107 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 RNU6-980P-201ENST00000516925 103 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 uc_338.17-201ENST00000619633 179 ntBASIC0.61□□□□□ -2.31
USP40Q9NVE5 MIR103A1-201ENST00000362165 78 ntBASIC0.6□□□□□ -2.31
USP40Q9NVE5 SNORD115-23-201ENST00000364461 82 ntBASIC0.6□□□□□ -2.31
USP40Q9NVE5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
USP40Q9NVE5 SNORD116.2-201ENST00000391251 93 ntBASIC0.6□□□□□ -2.31
USP40Q9NVE5 RNU7-129P-201ENST00000516128 62 ntBASIC0.6□□□□□ -2.31
USP40Q9NVE5 RNU6-808P-201ENST00000391233 108 ntBASIC0.59□□□□□ -2.31
USP40Q9NVE5 SNORD2-201ENST00000459163 69 ntBASIC0.59□□□□□ -2.31
USP40Q9NVE5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.32
USP40Q9NVE5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
USP40Q9NVE5 RNU6-246P-201ENST00000384702 107 ntBASIC0.58□□□□□ -2.32
USP40Q9NVE5 AC114737.2-201ENST00000421583 173 ntBASIC0.58□□□□□ -2.32
USP40Q9NVE5 SCARNA11.2-201ENST00000517183 154 ntBASIC0.58□□□□□ -2.32
USP40Q9NVE5 RNU6-458P-201ENST00000384179 107 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 MIR1197-201ENST00000408818 88 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 RNU6-172P-201ENST00000411000 93 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 RNU4-88P-201ENST00000411220 86 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 Y_RNA.698-201ENST00000516798 118 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 AL353803.5-201ENST00000599815 141 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 U6.58-201ENST00000613107 107 ntBASIC0.57□□□□□ -2.32
USP40Q9NVE5 RNU6-810P-201ENST00000364001 107 ntBASIC0.56□□□□□ -2.32
USP40Q9NVE5 MIR106A-201ENST00000384870 81 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 226 ms