Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL691482.2-201ENST00000457453 84 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 YWHAEP3-201ENST00000582767 121 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 MIR5704-201ENST00000584029 77 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 MIR4436A-201ENST00000585278 85 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.65□□□□□ -2.51
LIME1Q9H400 SNORD115-37-201ENST00000363768 82 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-340P-201ENST00000364005 107 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 SNORD116-22-201ENST00000384430 92 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-905P-201ENST00000384434 107 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 MIR203A-201ENST00000384836 110 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 MIR6854-201ENST00000614935 69 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 AC090617.8-201ENST00000623339 167 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 U6.96-201ENST00000636425 70 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-624P-201ENST00000363411 107 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 MIR488-201ENST00000365739 83 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 snoR1.1-201ENST00000628177 80 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 MIR204-201ENST00000385200 110 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 AL035461.1-201ENST00000421490 332 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 RNA5SP147-201ENST00000516493 109 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 AC140658.3-201ENST00000567603 271 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 MIR198-201ENST00000637333 62 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 RNU6-681P-201ENST00000364012 104 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 SNORA33.1-201ENST00000364957 130 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 SNORA3B-201ENST00000391305 131 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 AC093729.1-201ENST00000513074 128 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 AC021146.6-201ENST00000514659 117 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 MIR4723-201ENST00000585070 81 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 MIR8068-201ENST00000618032 68 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 RNU6-675P-201ENST00000384236 104 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR518B-201ENST00000385127 83 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 RNU6-402P-201ENST00000410678 103 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR548AI-201ENST00000579940 88 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR6739-201ENST00000622461 75 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR521-2-201ENST00000384818 87 ntBASIC-0.71□□□□□ -2.52
LIME1Q9H400 RNU6-557P-201ENST00000516842 110 ntBASIC-0.71□□□□□ -2.52
LIME1Q9H400 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 SNORD74.6-201ENST00000364796 70 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 SNORA62.4-201ENST00000365504 151 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 MIR587-201ENST00000384845 96 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.72□□□□□ -2.52
LIME1Q9H400 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-267P-201ENST00000516714 103 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-1-201ENST00000578940 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-2-201ENST00000579107 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-3-201ENST00000579566 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-4-201ENST00000617599 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR548BB-201ENST00000626714 66 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-44P-201ENST00000384045 107 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 SNORD22.1-201ENST00000516331 125 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 RNA5SP470-201ENST00000516463 106 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 RNU6-844P-201ENST00000517175 102 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 AL353803.5-201ENST00000599815 141 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 U2.22-201ENST00000636441 106 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 MIR4464-201ENST00000580818 92 ntBASIC-0.75□□□□□ -2.53
LIME1Q9H400 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNY1P7-201ENST00000384743 110 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNU6-721P-201ENST00000410155 105 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 MIR1255B2-201ENST00000408618 67 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 RNU6-168P-201ENST00000516189 101 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 RNU6-881P-201ENST00000516813 102 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 CYP3A54P-201ENST00000566950 75 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 RNU7-154P-201ENST00000516194 62 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR3681-201ENST00000580089 72 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR4320-201ENST00000636981 65 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR601-201ENST00000385256 79 ntBASIC-0.79□□□□□ -2.54
LIME1Q9H400 RNU6-303P-201ENST00000517091 106 ntBASIC-0.79□□□□□ -2.54
LIME1Q9H400 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 RNU6-686P-201ENST00000364839 107 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 AC022137.1-201ENST00000483735 151 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 RNU6-478P-201ENST00000363904 110 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 RNA5SP89-201ENST00000410300 108 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AC074348.1-201ENST00000426503 132 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AL445584.3-201ENST00000617173 78 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AC006160.2-201ENST00000637708 154 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 RNU6-129P-201ENST00000391022 107 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 AP000533.3-201ENST00000447704 118 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.82□□□□□ -2.54
LIME1Q9H400 MIR6888-201ENST00000621977 67 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-49P-201ENST00000384256 107 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-656P-201ENST00000516785 107 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.84□□□□□ -2.54
LIME1Q9H400 RNU6-153P-201ENST00000364422 104 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 SNORA8.1-201ENST00000384250 140 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 MIR517B-201ENST00000385102 67 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 MIR196A1-201ENST00000388006 70 ntBASIC-0.85□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 186.5 ms