Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR4315-2-201ENST00000640925 73 ntBASIC0.39□□□□□ -2.35
LIG3P49916 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
LIG3P49916 MIR106A-201ENST00000384870 81 ntBASIC0.38□□□□□ -2.35
LIG3P49916 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.37□□□□□ -2.35
LIG3P49916 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
LIG3P49916 MIR8087-201ENST00000612745 78 ntBASIC0.37□□□□□ -2.35
LIG3P49916 MIR330-201ENST00000362196 94 ntBASIC0.36□□□□□ -2.35
LIG3P49916 RNA5SP457-201ENST00000363657 124 ntBASIC0.36□□□□□ -2.35
LIG3P49916 Y_RNA.386-201ENST00000383913 105 ntBASIC0.36□□□□□ -2.35
LIG3P49916 U6.111-201ENST00000636093 83 ntBASIC0.36□□□□□ -2.35
LIG3P49916 Y_RNA.443-201ENST00000384135 111 ntBASIC0.35□□□□□ -2.35
LIG3P49916 MIR892B-201ENST00000401279 77 ntBASIC0.35□□□□□ -2.35
LIG3P49916 Y_RNA.115-201ENST00000363272 98 ntBASIC0.34□□□□□ -2.36
LIG3P49916 RNU6-630P-201ENST00000391258 106 ntBASIC0.34□□□□□ -2.36
LIG3P49916 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.34□□□□□ -2.36
LIG3P49916 RNA5SP330-201ENST00000517096 96 ntBASIC0.34□□□□□ -2.36
LIG3P49916 MIR610-201ENST00000385139 96 ntBASIC0.33□□□□□ -2.36
LIG3P49916 AC005520.4-201ENST00000604337 90 ntBASIC0.33□□□□□ -2.36
LIG3P49916 SNORD115-25-201ENST00000362619 82 ntBASIC0.32□□□□□ -2.36
LIG3P49916 MIR548C-201ENST00000384815 97 ntBASIC0.32□□□□□ -2.36
LIG3P49916 RNU6-1089P-201ENST00000516473 104 ntBASIC0.32□□□□□ -2.36
LIG3P49916 SNORA62.5-201ENST00000516634 120 ntBASIC0.32□□□□□ -2.36
LIG3P49916 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.32□□□□□ -2.36
LIG3P49916 RNA5SP98-201ENST00000363158 137 ntBASIC0.31□□□□□ -2.36
LIG3P49916 SNORA25.4-201ENST00000363666 124 ntBASIC0.31□□□□□ -2.36
LIG3P49916 RNU6-800P-201ENST00000384473 103 ntBASIC0.31□□□□□ -2.36
LIG3P49916 RNU6-337P-201ENST00000391243 106 ntBASIC0.31□□□□□ -2.36
LIG3P49916 MIR548H2-201ENST00000408874 88 ntBASIC0.31□□□□□ -2.36
LIG3P49916 MIR548V-201ENST00000584165 80 ntBASIC0.31□□□□□ -2.36
LIG3P49916 MIR6514-201ENST00000622549 70 ntBASIC0.31□□□□□ -2.36
LIG3P49916 MIR6773-201ENST00000612812 74 ntBASIC0.3□□□□□ -2.36
LIG3P49916 RNA5SP215-201ENST00000363440 122 ntBASIC0.29□□□□□ -2.36
LIG3P49916 SNORA42.1-201ENST00000363515 137 ntBASIC0.29□□□□□ -2.36
LIG3P49916 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
LIG3P49916 RNA5SP163-201ENST00000410304 99 ntBASIC0.29□□□□□ -2.36
LIG3P49916 MIR4743-201ENST00000584576 69 ntBASIC0.29□□□□□ -2.36
LIG3P49916 U2.7-201ENST00000619197 100 ntBASIC0.29□□□□□ -2.36
LIG3P49916 CR383656.4-201ENST00000546909 122 ntBASIC0.28□□□□□ -2.36
LIG3P49916 CYP3A54P-201ENST00000566950 75 ntBASIC0.28□□□□□ -2.36
LIG3P49916 AC104408.1-201ENST00000605241 170 ntBASIC0.28□□□□□ -2.36
LIG3P49916 RNU6-590P-201ENST00000365039 107 ntBASIC0.27□□□□□ -2.37
LIG3P49916 RNU6-1246P-201ENST00000391064 107 ntBASIC0.27□□□□□ -2.37
LIG3P49916 MIR1265-201ENST00000408444 86 ntBASIC0.27□□□□□ -2.37
LIG3P49916 AP000676.1-201ENST00000533307 52 ntBASIC0.27□□□□□ -2.37
LIG3P49916 MIR548AG1-201ENST00000579932 66 ntBASIC0.27□□□□□ -2.37
LIG3P49916 MIR4514-201ENST00000581410 57 ntBASIC0.27□□□□□ -2.37
LIG3P49916 MIR9-2-201ENST00000384838 87 ntBASIC0.26□□□□□ -2.37
LIG3P49916 MIR630-201ENST00000384957 97 ntBASIC0.26□□□□□ -2.37
LIG3P49916 MIR1197-201ENST00000408818 88 ntBASIC0.26□□□□□ -2.37
LIG3P49916 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
LIG3P49916 MIR148A-201ENST00000362215 68 ntBASIC0.25□□□□□ -2.37
LIG3P49916 RNU6-502P-201ENST00000362419 108 ntBASIC0.25□□□□□ -2.37
LIG3P49916 Y_RNA.340-201ENST00000365330 92 ntBASIC0.25□□□□□ -2.37
LIG3P49916 Y_RNA.375-201ENST00000365625 101 ntBASIC0.25□□□□□ -2.37
LIG3P49916 MIR593-201ENST00000384856 100 ntBASIC0.25□□□□□ -2.37
LIG3P49916 RNA5SP299-201ENST00000391203 116 ntBASIC0.25□□□□□ -2.37
LIG3P49916 MIR1255B2-201ENST00000408618 67 ntBASIC0.25□□□□□ -2.37
LIG3P49916 RNU6-180P-201ENST00000516697 61 ntBASIC0.25□□□□□ -2.37
LIG3P49916 AC023932.2-201ENST00000603176 175 ntBASIC0.25□□□□□ -2.37
LIG3P49916 Y_RNA.30-201ENST00000362572 97 ntBASIC0.24□□□□□ -2.37
LIG3P49916 RNA5SP214-201ENST00000363378 118 ntBASIC0.24□□□□□ -2.37
LIG3P49916 RNU6-302P-201ENST00000365249 107 ntBASIC0.23□□□□□ -2.37
LIG3P49916 Y_RNA.374-201ENST00000365606 101 ntBASIC0.23□□□□□ -2.37
LIG3P49916 MIRLET7B-201ENST00000385140 83 ntBASIC0.23□□□□□ -2.37
LIG3P49916 RNU7-174P-201ENST00000516248 59 ntBASIC0.23□□□□□ -2.37
LIG3P49916 U4.4-201ENST00000620626 117 ntBASIC0.23□□□□□ -2.37
LIG3P49916 uc_338.36-201ENST00000622331 158 ntBASIC0.23□□□□□ -2.37
LIG3P49916 SNORD114-5-201ENST00000362928 70 ntBASIC0.22□□□□□ -2.37
LIG3P49916 RNA5SP257-201ENST00000363023 116 ntBASIC0.22□□□□□ -2.37
LIG3P49916 MIR517B-201ENST00000385102 67 ntBASIC0.22□□□□□ -2.37
LIG3P49916 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
LIG3P49916 RNU6-542P-201ENST00000516405 103 ntBASIC0.22□□□□□ -2.37
LIG3P49916 MIR145-201ENST00000384967 88 ntBASIC0.21□□□□□ -2.38
LIG3P49916 MIR519A2-201ENST00000384990 87 ntBASIC0.21□□□□□ -2.38
LIG3P49916 RNA5SP63-201ENST00000391225 112 ntBASIC0.21□□□□□ -2.38
LIG3P49916 AL021921.1-201ENST00000442774 93 ntBASIC0.21□□□□□ -2.38
LIG3P49916 RNU7-159P-201ENST00000459284 62 ntBASIC0.21□□□□□ -2.38
LIG3P49916 RNU6-518P-201ENST00000516056 96 ntBASIC0.21□□□□□ -2.38
LIG3P49916 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
LIG3P49916 Y_RNA.325-201ENST00000365171 122 ntBASIC0.2□□□□□ -2.38
LIG3P49916 RNU6-788P-201ENST00000390967 104 ntBASIC0.2□□□□□ -2.38
LIG3P49916 SNORD114-9-201ENST00000364370 72 ntBASIC0.19□□□□□ -2.38
LIG3P49916 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.19□□□□□ -2.38
LIG3P49916 RNA5SP470-201ENST00000516463 106 ntBASIC0.19□□□□□ -2.38
LIG3P49916 RNU7-165P-201ENST00000458864 60 ntBASIC0.18□□□□□ -2.38
LIG3P49916 MIR4511-201ENST00000582784 87 ntBASIC0.18□□□□□ -2.38
LIG3P49916 MIR6507-201ENST00000613630 70 ntBASIC0.18□□□□□ -2.38
LIG3P49916 RNA5SP192-201ENST00000364404 120 ntBASIC0.17□□□□□ -2.38
LIG3P49916 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
LIG3P49916 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
LIG3P49916 SCARNA21.1-201ENST00000515996 128 ntBASIC0.17□□□□□ -2.38
LIG3P49916 AC103706.3-201ENST00000636297 85 ntBASIC0.17□□□□□ -2.38
LIG3P49916 RNU6-698P-201ENST00000363523 107 ntBASIC0.16□□□□□ -2.38
LIG3P49916 RNU6-34P-201ENST00000364874 107 ntBASIC0.16□□□□□ -2.38
LIG3P49916 RNU6-471P-201ENST00000383944 106 ntBASIC0.16□□□□□ -2.38
LIG3P49916 AC125388.1-201ENST00000459631 156 ntBASIC0.16□□□□□ -2.38
LIG3P49916 RNU6-929P-201ENST00000384429 107 ntBASIC0.15□□□□□ -2.39
LIG3P49916 SNORD113-2-201ENST00000391082 72 ntBASIC0.15□□□□□ -2.39
LIG3P49916 MIR5704-201ENST00000584029 77 ntBASIC0.15□□□□□ -2.39
LIG3P49916 Y_RNA.246-201ENST00000364495 108 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 246.5 ms