Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-752P-201ENST00000516376 102 ntBASIC-0.86□□□□□ -2.55
SCN1AP35498 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
SCN1AP35498 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.86□□□□□ -2.55
SCN1AP35498 MIR519A2-201ENST00000384990 87 ntBASIC-0.87□□□□□ -2.55
SCN1AP35498 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.87□□□□□ -2.55
SCN1AP35498 MTATP8P2-201ENST00000435212 202 ntBASIC-0.87□□□□□ -2.55
SCN1AP35498 RNU6-706P-201ENST00000517229 104 ntBASIC-0.87□□□□□ -2.55
SCN1AP35498 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.88□□□□□ -2.55
SCN1AP35498 RNU6-589P-201ENST00000516485 107 ntBASIC-0.88□□□□□ -2.55
SCN1AP35498 AC026421.1-201ENST00000519101 163 ntBASIC-0.88□□□□□ -2.55
SCN1AP35498 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.88□□□□□ -2.55
SCN1AP35498 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.88□□□□□ -2.55
SCN1AP35498 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 RNU6-10P-201ENST00000384036 107 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 SNORA40.13-201ENST00000516379 120 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 RNU6-766P-201ENST00000362478 107 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 RNU6-162P-201ENST00000516228 103 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 MIR3668-201ENST00000582138 75 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 MIR3133-201ENST00000583157 78 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 AC138207.3-201ENST00000585289 166 ntBASIC-0.89□□□□□ -2.55
SCN1AP35498 RNU6-340P-201ENST00000364005 107 ntBASIC-0.9□□□□□ -2.55
SCN1AP35498 SNORD77.2-201ENST00000391045 68 ntBASIC-0.9□□□□□ -2.55
SCN1AP35498 RNU2-51P-201ENST00000410708 197 ntBASIC-0.9□□□□□ -2.55
SCN1AP35498 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.9□□□□□ -2.55
SCN1AP35498 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.91□□□□□ -2.55
SCN1AP35498 AL353803.5-201ENST00000599815 141 ntBASIC-0.91□□□□□ -2.55
SCN1AP35498 RNU6-924P-201ENST00000362926 108 ntBASIC-0.91□□□□□ -2.56
SCN1AP35498 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.91□□□□□ -2.56
SCN1AP35498 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.91□□□□□ -2.56
SCN1AP35498 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.91□□□□□ -2.56
SCN1AP35498 SNORD114-17-201ENST00000364699 75 ntBASIC-0.92□□□□□ -2.56
SCN1AP35498 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.92□□□□□ -2.56
SCN1AP35498 SNORD116-22-201ENST00000384430 92 ntBASIC-0.92□□□□□ -2.56
SCN1AP35498 MIR3675-201ENST00000583661 73 ntBASIC-0.92□□□□□ -2.56
SCN1AP35498 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 SNX3P1X-201ENST00000414887 175 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 SCARNA18B-201ENST00000458806 135 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 MIR4464-201ENST00000580818 92 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 AP001318.4-201ENST00000616637 121 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 MIR6888-201ENST00000621977 67 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 SNORA26.4-201ENST00000391188 123 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 RNA5SP470-201ENST00000516463 106 ntBASIC-0.93□□□□□ -2.56
SCN1AP35498 MIR450A1-201ENST00000362262 91 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 snoU83B.1-201ENST00000517136 88 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 AC006160.2-201ENST00000637708 154 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 AL031737.1-201ENST00000450125 223 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 RNU7-153P-201ENST00000516455 62 ntBASIC-0.94□□□□□ -2.56
SCN1AP35498 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.94□□□□□ -2.56
SCN1AP35498 MIR1302-5-201ENST00000408164 150 ntBASIC-0.95□□□□□ -2.56
SCN1AP35498 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.95□□□□□ -2.56
SCN1AP35498 RNU7-88P-201ENST00000458752 63 ntBASIC-0.95□□□□□ -2.56
SCN1AP35498 U7.5-201ENST00000517224 61 ntBASIC-0.95□□□□□ -2.56
SCN1AP35498 SNORD90-201ENST00000391145 111 ntBASIC-0.96□□□□□ -2.56
SCN1AP35498 uc_338.19-201ENST00000616808 99 ntBASIC-0.96□□□□□ -2.56
SCN1AP35498 HLA-S-202ENST00000425174 53 ntBASIC-0.96□□□□□ -2.56
SCN1AP35498 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.96□□□□□ -2.56
SCN1AP35498 U6.81-201ENST00000612550 106 ntBASIC-0.96□□□□□ -2.56
SCN1AP35498 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.97□□□□□ -2.56
SCN1AP35498 MIR527-201ENST00000385244 85 ntBASIC-0.97□□□□□ -2.56
SCN1AP35498 RNU6-158P-201ENST00000517104 100 ntBASIC-0.97□□□□□ -2.56
SCN1AP35498 MIR3165-201ENST00000579874 75 ntBASIC-0.97□□□□□ -2.56
SCN1AP35498 MIR6738-201ENST00000619620 64 ntBASIC-0.97□□□□□ -2.56
SCN1AP35498 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 MIR3910-1-201ENST00000580936 111 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 MIR4490-201ENST00000582647 84 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 AL365222.1-201ENST00000614661 98 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 AC132825.6-201ENST00000638861 357 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 AL450471.1-201ENST00000447509 127 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 AL500527.2-201ENST00000454105 95 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 RNU6-656P-201ENST00000516785 107 ntBASIC-0.98□□□□□ -2.57
SCN1AP35498 AL021921.1-201ENST00000442774 93 ntBASIC-0.99□□□□□ -2.57
SCN1AP35498 RNU6-633P-201ENST00000362612 103 ntBASIC-0.99□□□□□ -2.57
SCN1AP35498 RNU6-576P-201ENST00000390854 102 ntBASIC-0.99□□□□□ -2.57
SCN1AP35498 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.99□□□□□ -2.57
SCN1AP35498 MT-TR-201ENST00000387439 65 ntBASIC-1□□□□□ -2.57
SCN1AP35498 RNU6-109P-201ENST00000516364 107 ntBASIC-1□□□□□ -2.57
SCN1AP35498 RNU6-184P-201ENST00000516514 107 ntBASIC-1□□□□□ -2.57
SCN1AP35498 RNU7-134P-201ENST00000458997 64 ntBASIC-1.01□□□□□ -2.57
SCN1AP35498 MIR4320-201ENST00000636981 65 ntBASIC-1.01□□□□□ -2.57
SCN1AP35498 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.01□□□□□ -2.57
SCN1AP35498 AL353691.2-201ENST00000443795 59 ntBASIC-1.01□□□□□ -2.57
SCN1AP35498 MIR4520-1-201ENST00000582609 70 ntBASIC-1.01□□□□□ -2.57
SCN1AP35498 SNORD115-22-201ENST00000364456 82 ntBASIC-1.02□□□□□ -2.57
SCN1AP35498 MIR587-201ENST00000384845 96 ntBASIC-1.02□□□□□ -2.57
SCN1AP35498 RNU6-303P-201ENST00000517091 106 ntBASIC-1.02□□□□□ -2.57
SCN1AP35498 MIR1297-201ENST00000637311 77 ntBASIC-1.02□□□□□ -2.57
SCN1AP35498 SNORD114-3-201ENST00000364969 75 ntBASIC-1.03□□□□□ -2.57
SCN1AP35498 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.03□□□□□ -2.57
SCN1AP35498 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.03□□□□□ -2.57
SCN1AP35498 MIR5591-201ENST00000578248 65 ntBASIC-1.03□□□□□ -2.57
SCN1AP35498 MIR6818-201ENST00000621576 65 ntBASIC-1.03□□□□□ -2.57
SCN1AP35498 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.04□□□□□ -2.58
SCN1AP35498 MIR4770-201ENST00000579149 58 ntBASIC-1.04□□□□□ -2.58
SCN1AP35498 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.05□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 242.2 ms