Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORA33.1-201ENST00000364957 130 ntBASIC0.2□□□□□ -2.38
HOXD9P28356 RNU6-1036P-201ENST00000383959 104 ntBASIC0.2□□□□□ -2.38
HOXD9P28356 MIR593-201ENST00000384856 100 ntBASIC0.2□□□□□ -2.38
HOXD9P28356 MIR1197-201ENST00000408818 88 ntBASIC0.2□□□□□ -2.38
HOXD9P28356 uc_338.36-201ENST00000622331 158 ntBASIC0.2□□□□□ -2.38
HOXD9P28356 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.19□□□□□ -2.38
HOXD9P28356 SNORD114-5-201ENST00000362928 70 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 RNU6-895P-201ENST00000384125 103 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 SNORD116-24-201ENST00000384549 92 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 MIR610-201ENST00000385139 96 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 MTND4LP1-201ENST00000446263 157 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 MIR6718-201ENST00000616153 80 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 MIR2909-201ENST00000617113 69 ntBASIC0.19□□□□□ -2.38
HOXD9P28356 Y_RNA.30-201ENST00000362572 97 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 AP000676.1-201ENST00000533307 52 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 CR383656.4-201ENST00000546909 122 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 AL109933.3-201ENST00000619095 188 ntBASIC0.18□□□□□ -2.38
HOXD9P28356 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.18□□□□□ -2.38
HOXD9P28356 RNA5SP163-201ENST00000410304 99 ntBASIC0.17□□□□□ -2.38
HOXD9P28356 AC104408.1-201ENST00000605241 170 ntBASIC0.17□□□□□ -2.38
HOXD9P28356 AC090617.8-201ENST00000623339 167 ntBASIC0.17□□□□□ -2.38
HOXD9P28356 U6.96-201ENST00000636425 70 ntBASIC0.17□□□□□ -2.38
HOXD9P28356 RNU6-502P-201ENST00000362419 108 ntBASIC0.16□□□□□ -2.38
HOXD9P28356 RNA5SP214-201ENST00000363378 118 ntBASIC0.16□□□□□ -2.38
HOXD9P28356 RNU6-337P-201ENST00000391243 106 ntBASIC0.16□□□□□ -2.38
HOXD9P28356 SNORA62.5-201ENST00000516634 120 ntBASIC0.16□□□□□ -2.38
HOXD9P28356 MIR548V-201ENST00000584165 80 ntBASIC0.16□□□□□ -2.38
HOXD9P28356 MIR148A-201ENST00000362215 68 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 SNORD115-25-201ENST00000362619 82 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 RNA5SP98-201ENST00000363158 137 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 RNU6-668P-201ENST00000364180 107 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 SNORD114-9-201ENST00000364370 72 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 RNU6-663P-201ENST00000391105 106 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 MIR1295A-201ENST00000408463 79 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 AC114801.3-201ENST00000510231 177 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 MIR6773-201ENST00000612812 74 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 MIR6514-201ENST00000622549 70 ntBASIC0.15□□□□□ -2.39
HOXD9P28356 Y_RNA.115-201ENST00000363272 98 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 RNU6-649P-201ENST00000384463 107 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 MIR145-201ENST00000384967 88 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 RNU7-165P-201ENST00000458864 60 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 RNU6-539P-201ENST00000516665 103 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 CYP3A54P-201ENST00000566950 75 ntBASIC0.14□□□□□ -2.39
HOXD9P28356 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
HOXD9P28356 SNORD30.1-201ENST00000391309 70 ntBASIC0.13□□□□□ -2.39
HOXD9P28356 RNU6-1089P-201ENST00000516473 104 ntBASIC0.13□□□□□ -2.39
HOXD9P28356 RNA5SP215-201ENST00000363440 122 ntBASIC0.12□□□□□ -2.39
HOXD9P28356 RNA5SP457-201ENST00000363657 124 ntBASIC0.12□□□□□ -2.39
HOXD9P28356 RNU6-929P-201ENST00000384429 107 ntBASIC0.12□□□□□ -2.39
HOXD9P28356 U2.7-201ENST00000619197 100 ntBASIC0.12□□□□□ -2.39
HOXD9P28356 MIRLET7B-201ENST00000385140 83 ntBASIC0.11□□□□□ -2.39
HOXD9P28356 AL445193.1-201ENST00000441183 141 ntBASIC0.11□□□□□ -2.39
HOXD9P28356 U6.111-201ENST00000636093 83 ntBASIC0.11□□□□□ -2.39
HOXD9P28356 Y_RNA.375-201ENST00000365625 101 ntBASIC0.1□□□□□ -2.39
HOXD9P28356 Y_RNA.443-201ENST00000384135 111 ntBASIC0.1□□□□□ -2.39
HOXD9P28356 RNA5SP63-201ENST00000391225 112 ntBASIC0.1□□□□□ -2.39
HOXD9P28356 MIR6507-201ENST00000613630 70 ntBASIC0.1□□□□□ -2.39
HOXD9P28356 RNU6-630P-201ENST00000391258 106 ntBASIC0.09□□□□□ -2.4
HOXD9P28356 MIR1255B2-201ENST00000408618 67 ntBASIC0.09□□□□□ -2.4
HOXD9P28356 RNU7-159P-201ENST00000459284 62 ntBASIC0.09□□□□□ -2.4
HOXD9P28356 MIR5704-201ENST00000584029 77 ntBASIC0.09□□□□□ -2.4
HOXD9P28356 MIR630-201ENST00000384957 97 ntBASIC0.08□□□□□ -2.4
HOXD9P28356 RNU6-1246P-201ENST00000391064 107 ntBASIC0.08□□□□□ -2.4
HOXD9P28356 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.08□□□□□ -2.4
HOXD9P28356 RNU7-174P-201ENST00000516248 59 ntBASIC0.08□□□□□ -2.4
HOXD9P28356 RNA5SP470-201ENST00000516463 106 ntBASIC0.08□□□□□ -2.4
HOXD9P28356 SNORA25.4-201ENST00000363666 124 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 RNU6-900P-201ENST00000384498 102 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 RNU6-455P-201ENST00000384681 107 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 MIR4667-201ENST00000578933 66 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 MIR4290-201ENST00000583807 95 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 AC005520.4-201ENST00000604337 90 ntBASIC0.07□□□□□ -2.4
HOXD9P28356 RNU6-800P-201ENST00000384473 103 ntBASIC0.06□□□□□ -2.4
HOXD9P28356 AL021921.1-201ENST00000442774 93 ntBASIC0.06□□□□□ -2.4
HOXD9P28356 RNU7-55P-201ENST00000459426 62 ntBASIC0.06□□□□□ -2.4
HOXD9P28356 RNU6-518P-201ENST00000516056 96 ntBASIC0.06□□□□□ -2.4
HOXD9P28356 MIR548AG1-201ENST00000579932 66 ntBASIC0.06□□□□□ -2.4
HOXD9P28356 SNORD115-23-201ENST00000364461 82 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 RNU6-46P-201ENST00000383860 107 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 MIR517B-201ENST00000385102 67 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 AC139453.2-201ENST00000487255 133 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 RNU6-542P-201ENST00000516405 103 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 MIR8068-201ENST00000618032 68 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.05□□□□□ -2.4
HOXD9P28356 Y_RNA.386-201ENST00000383913 105 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 RNU6-901P-201ENST00000384593 106 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 MIR9-2-201ENST00000384838 87 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 AC244250.2-201ENST00000418731 148 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 RNU7-154P-201ENST00000516194 62 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 snoR1.1-201ENST00000628177 80 ntBASIC0.04□□□□□ -2.4
HOXD9P28356 MIR655-201ENST00000362159 97 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 RNU6-698P-201ENST00000363523 107 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 RNU6-34P-201ENST00000364874 107 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 RNU6-590P-201ENST00000365039 107 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 RNU6-302P-201ENST00000365249 107 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 Y_RNA.374-201ENST00000365606 101 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms