Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU6-458P-201ENST00000384179 107 ntBASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 RNU6-1206P-201ENST00000516339 103 ntBASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 RNA5SP470-201ENST00000516463 106 ntBASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 MIR548AL-201ENST00000578416 97 ntBASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 U6.58-201ENST00000613107 107 ntBASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 RNU6-924P-201ENST00000362926 108 ntBASIC2.06□□□□□ -2.08
CCDC61Q9Y6R9 RNU4-52P-201ENST00000384209 138 ntBASIC2.06□□□□□ -2.08
CCDC61Q9Y6R9 SNORA25-201ENST00000384384 134 ntBASIC2.06□□□□□ -2.08
CCDC61Q9Y6R9 RNA5SP268-201ENST00000516828 124 ntBASIC2.06□□□□□ -2.08
CCDC61Q9Y6R9 RNA5SP364-201ENST00000516938 78 ntBASIC2.06□□□□□ -2.08
CCDC61Q9Y6R9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC61Q9Y6R9 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CCDC61Q9Y6R9 MIR579-201ENST00000385221 98 ntBASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 MIR1276-201ENST00000408707 83 ntBASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 AL354695.1-201ENST00000427935 228 ntBASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 MIR548AG1-201ENST00000579932 66 ntBASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 AC025627.3-201ENST00000582078 182 ntBASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC61Q9Y6R9 RNU6-986P-201ENST00000363133 102 ntBASIC2.03□□□□□ -2.08
CCDC61Q9Y6R9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CCDC61Q9Y6R9 MIR7111-201ENST00000619751 72 ntBASIC2.01□□□□□ -2.09
CCDC61Q9Y6R9 Y_RNA.69-201ENST00000362885 109 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 SNORA36.1-201ENST00000363424 132 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 MIR329-2-201ENST00000385029 84 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 MIR1304-201ENST00000408243 91 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 MIR4448-201ENST00000584360 86 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 MIR6773-201ENST00000612812 74 ntBASIC2□□□□□ -2.09
CCDC61Q9Y6R9 MIR200A-201ENST00000384875 90 ntBASIC1.99□□□□□ -2.09
CCDC61Q9Y6R9 RNU6-337P-201ENST00000391243 106 ntBASIC1.99□□□□□ -2.09
CCDC61Q9Y6R9 RNU7-151P-201ENST00000516930 53 ntBASIC1.99□□□□□ -2.09
CCDC61Q9Y6R9 RNU4-45P-201ENST00000365469 141 ntBASIC1.98□□□□□ -2.09
CCDC61Q9Y6R9 MIR7107-201ENST00000611489 80 ntBASIC1.98□□□□□ -2.09
CCDC61Q9Y6R9 SNORA70.25-201ENST00000612741 95 ntBASIC1.98□□□□□ -2.09
CCDC61Q9Y6R9 AL353770.2-201ENST00000620024 78 ntBASIC1.98□□□□□ -2.09
CCDC61Q9Y6R9 RNU6-1204P-201ENST00000363948 107 ntBASIC1.97□□□□□ -2.09
CCDC61Q9Y6R9 SNORD114-29-201ENST00000364819 70 ntBASIC1.97□□□□□ -2.09
CCDC61Q9Y6R9 Y_RNA.355-201ENST00000365462 98 ntBASIC1.97□□□□□ -2.09
CCDC61Q9Y6R9 MIR18A-201ENST00000362310 71 ntBASIC1.96□□□□□ -2.1
CCDC61Q9Y6R9 RNU6-995P-201ENST00000391244 107 ntBASIC1.96□□□□□ -2.1
CCDC61Q9Y6R9 MIR4285-201ENST00000581001 85 ntBASIC1.96□□□□□ -2.1
CCDC61Q9Y6R9 MIR6504-201ENST00000613520 61 ntBASIC1.96□□□□□ -2.1
CCDC61Q9Y6R9 RNU6-828P-201ENST00000364876 107 ntBASIC1.95□□□□□ -2.1
CCDC61Q9Y6R9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.95□□□□□ -2.1
CCDC61Q9Y6R9 HMGN2P22-201ENST00000427588 175 ntBASIC1.95□□□□□ -2.1
CCDC61Q9Y6R9 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.95□□□□□ -2.1
CCDC61Q9Y6R9 RNY1P8-201ENST00000383970 114 ntBASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 MIR19B1-201ENST00000384829 87 ntBASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 AL451105.1-201ENST00000450005 189 ntBASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 MIR5706-201ENST00000579841 80 ntBASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC61Q9Y6R9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC61Q9Y6R9 RNA5SP327-201ENST00000362494 101 ntBASIC1.93□□□□□ -2.1
CCDC61Q9Y6R9 RNU6-598P-201ENST00000364017 105 ntBASIC1.93□□□□□ -2.1
CCDC61Q9Y6R9 U6.103-201ENST00000637085 61 ntBASIC1.93□□□□□ -2.1
CCDC61Q9Y6R9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CCDC61Q9Y6R9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC61Q9Y6R9 RNA5SP94-201ENST00000516917 108 ntBASIC1.92□□□□□ -2.1
CCDC61Q9Y6R9 uc_338.20-201ENST00000621563 178 ntBASIC1.92□□□□□ -2.1
CCDC61Q9Y6R9 U2.18-201ENST00000622185 84 ntBASIC1.92□□□□□ -2.1
CCDC61Q9Y6R9 MIRLET7B-201ENST00000385140 83 ntBASIC1.91□□□□□ -2.1
CCDC61Q9Y6R9 MIR320A-201ENST00000385302 82 ntBASIC1.91□□□□□ -2.1
CCDC61Q9Y6R9 RNA5SP102-201ENST00000516865 106 ntBASIC1.9□□□□□ -2.11
CCDC61Q9Y6R9 AC011195.1-201ENST00000578177 177 ntBASIC1.9□□□□□ -2.11
CCDC61Q9Y6R9 MIR4752-201ENST00000579672 72 ntBASIC1.9□□□□□ -2.11
CCDC61Q9Y6R9 MIR548AA1-201ENST00000384971 97 ntBASIC1.89□□□□□ -2.11
CCDC61Q9Y6R9 SNORD124-201ENST00000459577 104 ntBASIC1.89□□□□□ -2.11
CCDC61Q9Y6R9 MIR3660-201ENST00000584845 100 ntBASIC1.89□□□□□ -2.11
CCDC61Q9Y6R9 RNU6-822P-201ENST00000362707 106 ntBASIC1.88□□□□□ -2.11
CCDC61Q9Y6R9 SNORD45.2-201ENST00000363552 72 ntBASIC1.88□□□□□ -2.11
CCDC61Q9Y6R9 RNU6-945P-201ENST00000383947 107 ntBASIC1.87□□□□□ -2.11
CCDC61Q9Y6R9 Y_RNA.118-201ENST00000363300 101 ntBASIC1.85□□□□□ -2.11
CCDC61Q9Y6R9 RNU6-782P-201ENST00000516852 104 ntBASIC1.85□□□□□ -2.11
CCDC61Q9Y6R9 U7.6-201ENST00000610841 64 ntBASIC1.85□□□□□ -2.11
CCDC61Q9Y6R9 RNA5SP363-201ENST00000365072 115 ntBASIC1.84□□□□□ -2.11
CCDC61Q9Y6R9 SNORA49-201ENST00000386157 136 ntBASIC1.84□□□□□ -2.11
CCDC61Q9Y6R9 SNORD99-201ENST00000408612 74 ntBASIC1.84□□□□□ -2.11
CCDC61Q9Y6R9 RNU6-721P-201ENST00000410155 105 ntBASIC1.84□□□□□ -2.11
CCDC61Q9Y6R9 MIR6078-201ENST00000611069 100 ntBASIC1.84□□□□□ -2.11
CCDC61Q9Y6R9 RNU7-188P-201ENST00000517063 64 ntBASIC1.83□□□□□ -2.12
CCDC61Q9Y6R9 SNORD114-24-201ENST00000365029 72 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 RNU6-742P-201ENST00000365289 107 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 MIR125B1-201ENST00000385236 88 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 RNU6-1262P-201ENST00000516217 96 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 RNA5SP255-201ENST00000516370 107 ntBASIC1.82□□□□□ -2.12
CCDC61Q9Y6R9 RNU6-502P-201ENST00000362419 108 ntBASIC1.81□□□□□ -2.12
CCDC61Q9Y6R9 MIR4452-201ENST00000583004 71 ntBASIC1.81□□□□□ -2.12
CCDC61Q9Y6R9 AL353803.5-201ENST00000599815 141 ntBASIC1.81□□□□□ -2.12
CCDC61Q9Y6R9 MIR489-201ENST00000384923 84 ntBASIC1.8□□□□□ -2.12
CCDC61Q9Y6R9 MIR96-201ENST00000362288 78 ntBASIC1.79□□□□□ -2.12
CCDC61Q9Y6R9 SNORD114-22-201ENST00000365423 72 ntBASIC1.79□□□□□ -2.12
CCDC61Q9Y6R9 MIR618-201ENST00000385287 98 ntBASIC1.78□□□□□ -2.12
CCDC61Q9Y6R9 MIR3122-201ENST00000577243 73 ntBASIC1.77□□□□□ -2.13
CCDC61Q9Y6R9 RNU1-29P-201ENST00000606574 126 ntBASIC1.77□□□□□ -2.13
CCDC61Q9Y6R9 Y_RNA.139-201ENST00000363464 102 ntBASIC1.76□□□□□ -2.13
CCDC61Q9Y6R9 RNA5SP61-201ENST00000516453 100 ntBASIC1.76□□□□□ -2.13
CCDC61Q9Y6R9 RNU6-1036P-201ENST00000383959 104 ntBASIC1.75□□□□□ -2.13
CCDC61Q9Y6R9 RNA5SP222-201ENST00000411039 105 ntBASIC1.75□□□□□ -2.13
CCDC61Q9Y6R9 RNU6-175P-201ENST00000516896 107 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 203.5 ms