Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 MIR6509-201ENST00000614603 85 ntBASIC0.28□□□□□ -2.36
PKP4Q99569 MIR516B1-201ENST00000385211 90 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 SNORA62.5-201ENST00000516634 120 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 AC069113.3-201ENST00000521019 150 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 MIR4484-201ENST00000582855 83 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 MIR8087-201ENST00000612745 78 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 MIR499B-201ENST00000636498 73 ntBASIC0.27□□□□□ -2.37
PKP4Q99569 AC084368.1-201ENST00000620935 65 ntBASIC0.26□□□□□ -2.37
PKP4Q99569 MIR20A-201ENST00000362279 71 ntBASIC0.25□□□□□ -2.37
PKP4Q99569 SNORD114-29-201ENST00000364819 70 ntBASIC0.25□□□□□ -2.37
PKP4Q99569 RNU6-260P-201ENST00000384092 107 ntBASIC0.25□□□□□ -2.37
PKP4Q99569 SNORA8.1-201ENST00000384250 140 ntBASIC0.25□□□□□ -2.37
PKP4Q99569 MIR3675-201ENST00000583661 73 ntBASIC0.25□□□□□ -2.37
PKP4Q99569 RNU6-127P-201ENST00000390897 107 ntBASIC0.24□□□□□ -2.37
PKP4Q99569 AC244090.1-201ENST00000441884 93 ntBASIC0.24□□□□□ -2.37
PKP4Q99569 MIR3925-201ENST00000584674 77 ntBASIC0.24□□□□□ -2.37
PKP4Q99569 RNU6-330P-201ENST00000363015 107 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 RNU6-990P-201ENST00000364385 104 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 MIR203A-201ENST00000384836 110 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 SNORA75.1-201ENST00000391130 148 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 SCARNA18B-201ENST00000458806 135 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 RNU6-782P-201ENST00000516852 104 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 RNU7-188P-201ENST00000517063 64 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 MIR3657-201ENST00000584818 117 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 U7.4-201ENST00000614961 63 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 MIR4315-1-201ENST00000636800 73 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 MIR4315-2-201ENST00000640925 73 ntBASIC0.23□□□□□ -2.37
PKP4Q99569 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
PKP4Q99569 SNORA2.1-201ENST00000363089 137 ntBASIC0.22□□□□□ -2.37
PKP4Q99569 RNA5SP457-201ENST00000363657 124 ntBASIC0.22□□□□□ -2.37
PKP4Q99569 MIR876-201ENST00000401147 81 ntBASIC0.22□□□□□ -2.37
PKP4Q99569 AC023932.2-201ENST00000603176 175 ntBASIC0.22□□□□□ -2.37
PKP4Q99569 AC145423.2-201ENST00000610631 239 ntBASIC0.22□□□□□ -2.37
PKP4Q99569 MIR548E-201ENST00000408287 88 ntBASIC0.21□□□□□ -2.38
PKP4Q99569 Y_RNA.681-201ENST00000516445 113 ntBASIC0.21□□□□□ -2.38
PKP4Q99569 RNA5SP330-201ENST00000517096 96 ntBASIC0.21□□□□□ -2.38
PKP4Q99569 SCARNA11.2-201ENST00000517183 154 ntBASIC0.21□□□□□ -2.38
PKP4Q99569 MIR4514-201ENST00000581410 57 ntBASIC0.21□□□□□ -2.38
PKP4Q99569 RNA5SP325-201ENST00000363756 130 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 Y_RNA.244-201ENST00000364484 109 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 Y_RNA.250-201ENST00000364542 110 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 MIR582-201ENST00000365731 98 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
PKP4Q99569 SNORD2-201ENST00000459163 69 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 RNU6-638P-201ENST00000516582 104 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
PKP4Q99569 Y_RNA.115-201ENST00000363272 98 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 SNORA63.6-201ENST00000364921 119 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 MIR643-201ENST00000385267 97 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 SNORA40.17-201ENST00000517256 115 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 Y_RNA.788-201ENST00000622394 112 ntBASIC0.19□□□□□ -2.38
PKP4Q99569 AC021146.9-201ENST00000512503 156 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 RNU6-70P-201ENST00000516438 60 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 RNU6-175P-201ENST00000516896 107 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 MIR3134-201ENST00000579433 74 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 RN7SL660P-201ENST00000614852 299 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 MIR4662A-201ENST00000637499 67 ntBASIC0.18□□□□□ -2.38
PKP4Q99569 SNORD45.1-201ENST00000363181 77 ntBASIC0.17□□□□□ -2.38
PKP4Q99569 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
PKP4Q99569 MIR892B-201ENST00000401279 77 ntBASIC0.17□□□□□ -2.38
PKP4Q99569 RNA5SP147-201ENST00000516493 109 ntBASIC0.17□□□□□ -2.38
PKP4Q99569 MIR664A-201ENST00000626086 82 ntBASIC0.17□□□□□ -2.38
PKP4Q99569 SNORA42.1-201ENST00000363515 137 ntBASIC0.16□□□□□ -2.38
PKP4Q99569 RNU6-411P-201ENST00000384451 107 ntBASIC0.16□□□□□ -2.38
PKP4Q99569 MIR610-201ENST00000385139 96 ntBASIC0.16□□□□□ -2.38
PKP4Q99569 MIR4743-201ENST00000584576 69 ntBASIC0.16□□□□□ -2.38
PKP4Q99569 MIR8053-201ENST00000613344 75 ntBASIC0.16□□□□□ -2.38
PKP4Q99569 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.16□□□□□ -2.38
PKP4Q99569 SNORA15B-2-201ENST00000384058 135 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 SNORA15B-1-201ENST00000384334 135 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 RNA5SP63-201ENST00000391225 112 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 MIR1197-201ENST00000408818 88 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 snoU13.13-201ENST00000458842 104 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 Y_RNA.633-201ENST00000459107 95 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 AC104408.1-201ENST00000605241 170 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 AL109933.3-201ENST00000619095 188 ntBASIC0.15□□□□□ -2.39
PKP4Q99569 RNA5SP214-201ENST00000363378 118 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-776P-201ENST00000364403 104 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-1022P-201ENST00000365049 104 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-1036P-201ENST00000383959 104 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 MIR106A-201ENST00000384870 81 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-604P-201ENST00000390917 100 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-587P-201ENST00000391282 106 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 MIR548H2-201ENST00000408874 88 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 MIR6739-201ENST00000622461 75 ntBASIC0.14□□□□□ -2.39
PKP4Q99569 RNU6-1162P-201ENST00000384443 104 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 RNU6-1241P-201ENST00000384536 107 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 MIR154-201ENST00000385243 84 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 CR383656.4-201ENST00000546909 122 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 MIR6718-201ENST00000616153 80 ntBASIC0.13□□□□□ -2.39
PKP4Q99569 SNORD115-22-201ENST00000364456 82 ntBASIC0.12□□□□□ -2.39
PKP4Q99569 Y_RNA.545-201ENST00000384652 105 ntBASIC0.12□□□□□ -2.39
PKP4Q99569 MIR521-2-201ENST00000384818 87 ntBASIC0.12□□□□□ -2.39
PKP4Q99569 MIR593-201ENST00000384856 100 ntBASIC0.12□□□□□ -2.39
PKP4Q99569 MIR889-201ENST00000401280 79 ntBASIC0.12□□□□□ -2.39
PKP4Q99569 RNA5SP163-201ENST00000410304 99 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 220.7 ms