Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-554P-201ENST00000410466 106 ntBASIC-0.91□□□□□ -2.56
CCDC54Q8NEL0 AP000533.3-201ENST00000447704 118 ntBASIC-0.91□□□□□ -2.56
CCDC54Q8NEL0 RNA5SP147-201ENST00000516493 109 ntBASIC-0.91□□□□□ -2.56
CCDC54Q8NEL0 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.91□□□□□ -2.56
CCDC54Q8NEL0 SNORA33.1-201ENST00000364957 130 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 RNU6-106P-201ENST00000384405 107 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 SNORA19-201ENST00000384737 128 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 MTATP6P29-201ENST00000415057 132 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 AC022137.1-201ENST00000483735 151 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 MIR3681-201ENST00000580089 72 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 MIR3657-201ENST00000584818 117 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 U6.96-201ENST00000636425 70 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 MIR4773-1-201ENST00000637203 78 ntBASIC-0.92□□□□□ -2.56
CCDC54Q8NEL0 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 SNORD114-15-201ENST00000364687 72 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 RNY4P3-201ENST00000365254 95 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 RNU6-162P-201ENST00000516228 103 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 RNU6-412P-201ENST00000516434 106 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 RNU7-153P-201ENST00000516455 62 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 MIR4796-201ENST00000580742 81 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 U6.81-201ENST00000612550 106 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 snoR1.1-201ENST00000628177 80 ntBASIC-0.93□□□□□ -2.56
CCDC54Q8NEL0 SNORD74.6-201ENST00000364796 70 ntBASIC-0.94□□□□□ -2.56
CCDC54Q8NEL0 RNU6-959P-201ENST00000384671 107 ntBASIC-0.94□□□□□ -2.56
CCDC54Q8NEL0 AC006254.2-201ENST00000603259 279 ntBASIC-0.94□□□□□ -2.56
CCDC54Q8NEL0 AL365222.1-201ENST00000614661 98 ntBASIC-0.94□□□□□ -2.56
CCDC54Q8NEL0 MIR6888-201ENST00000621977 67 ntBASIC-0.94□□□□□ -2.56
CCDC54Q8NEL0 SNORD116-10-201ENST00000363791 102 ntBASIC-0.95□□□□□ -2.56
CCDC54Q8NEL0 SNORD115-27-201ENST00000364430 82 ntBASIC-0.95□□□□□ -2.56
CCDC54Q8NEL0 MT-TR-201ENST00000387439 65 ntBASIC-0.95□□□□□ -2.56
CCDC54Q8NEL0 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.95□□□□□ -2.56
CCDC54Q8NEL0 MIR6509-201ENST00000614603 85 ntBASIC-0.95□□□□□ -2.56
CCDC54Q8NEL0 RNU6-208P-201ENST00000362431 107 ntBASIC-0.96□□□□□ -2.56
CCDC54Q8NEL0 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.96□□□□□ -2.56
CCDC54Q8NEL0 AL353803.5-201ENST00000599815 141 ntBASIC-0.96□□□□□ -2.56
CCDC54Q8NEL0 U7.3-201ENST00000616123 62 ntBASIC-0.96□□□□□ -2.56
CCDC54Q8NEL0 SNORA2.1-201ENST00000363089 137 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 SNORD114-25-201ENST00000363742 72 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 RNU6-431P-201ENST00000383874 107 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 RNU6-746P-201ENST00000384112 109 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 MIR124-2-201ENST00000385081 109 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 MIR6129-201ENST00000616087 109 ntBASIC-0.97□□□□□ -2.56
CCDC54Q8NEL0 RNU5F-1-201ENST00000362507 117 ntBASIC-0.98□□□□□ -2.57
CCDC54Q8NEL0 AL500527.2-201ENST00000454105 95 ntBASIC-0.98□□□□□ -2.57
CCDC54Q8NEL0 AL445584.3-201ENST00000617173 78 ntBASIC-0.98□□□□□ -2.57
CCDC54Q8NEL0 RNY1P7-201ENST00000384743 110 ntBASIC-0.99□□□□□ -2.57
CCDC54Q8NEL0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC54Q8NEL0 MIR3671-201ENST00000580455 88 ntBASIC-0.99□□□□□ -2.57
CCDC54Q8NEL0 MIR6086-201ENST00000638065 55 ntBASIC-0.99□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.107-201ENST00000363190 121 ntBASIC-1□□□□□ -2.57
CCDC54Q8NEL0 RNU6-81P-201ENST00000365608 104 ntBASIC-1□□□□□ -2.57
CCDC54Q8NEL0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1□□□□□ -2.57
CCDC54Q8NEL0 MIR1255B2-201ENST00000408618 67 ntBASIC-1□□□□□ -2.57
CCDC54Q8NEL0 CYP3A54P-201ENST00000566950 75 ntBASIC-1□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 SNORD64-201ENST00000386683 67 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 MIR1302-5-201ENST00000408164 150 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 AL691482.2-201ENST00000457453 84 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 SNORD18.2-201ENST00000459604 70 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 RNU6-589P-201ENST00000516485 107 ntBASIC-1.01□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 SNORA62.4-201ENST00000365504 151 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 MIR147A-201ENST00000385079 72 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 MIR1236-201ENST00000408340 102 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.02□□□□□ -2.57
CCDC54Q8NEL0 MIR196A1-201ENST00000388006 70 ntBASIC-1.03□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.03□□□□□ -2.57
CCDC54Q8NEL0 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.04□□□□□ -2.58
CCDC54Q8NEL0 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.04□□□□□ -2.58
CCDC54Q8NEL0 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.04□□□□□ -2.58
CCDC54Q8NEL0 AC008267.6-201ENST00000441664 139 ntBASIC-1.04□□□□□ -2.58
CCDC54Q8NEL0 RNU6-274P-201ENST00000459566 107 ntBASIC-1.04□□□□□ -2.58
CCDC54Q8NEL0 SNORD114-17-201ENST00000364699 75 ntBASIC-1.05□□□□□ -2.58
CCDC54Q8NEL0 snoU13.19-201ENST00000459148 104 ntBASIC-1.05□□□□□ -2.58
CCDC54Q8NEL0 MIR548AX-201ENST00000580117 73 ntBASIC-1.05□□□□□ -2.58
CCDC54Q8NEL0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.05□□□□□ -2.58
CCDC54Q8NEL0 MIR6739-201ENST00000622461 75 ntBASIC-1.05□□□□□ -2.58
CCDC54Q8NEL0 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.06□□□□□ -2.58
CCDC54Q8NEL0 MIR521-2-201ENST00000384818 87 ntBASIC-1.06□□□□□ -2.58
CCDC54Q8NEL0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.06□□□□□ -2.58
CCDC54Q8NEL0 MIR548AG1-201ENST00000579932 66 ntBASIC-1.06□□□□□ -2.58
CCDC54Q8NEL0 RNU6-766P-201ENST00000362478 107 ntBASIC-1.07□□□□□ -2.58
CCDC54Q8NEL0 RNU6-340P-201ENST00000364005 107 ntBASIC-1.07□□□□□ -2.58
CCDC54Q8NEL0 MTATP8P2-201ENST00000435212 202 ntBASIC-1.07□□□□□ -2.58
CCDC54Q8NEL0 MIR519A2-201ENST00000384990 87 ntBASIC-1.08□□□□□ -2.58
CCDC54Q8NEL0 MIR382-201ENST00000637119 76 ntBASIC-1.08□□□□□ -2.58
CCDC54Q8NEL0 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.09□□□□□ -2.58
CCDC54Q8NEL0 RNA5SP470-201ENST00000516463 106 ntBASIC-1.09□□□□□ -2.58
CCDC54Q8NEL0 MIR3668-201ENST00000582138 75 ntBASIC-1.09□□□□□ -2.58
CCDC54Q8NEL0 AL450471.1-201ENST00000447509 127 ntBASIC-1.1□□□□□ -2.59
CCDC54Q8NEL0 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.1□□□□□ -2.59
CCDC54Q8NEL0 RNU6-158P-201ENST00000517104 100 ntBASIC-1.1□□□□□ -2.59
CCDC54Q8NEL0 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.11□□□□□ -2.59
CCDC54Q8NEL0 MIR519C-201ENST00000385053 87 ntBASIC-1.11□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 182.4 ms