Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RNA5SP192-201ENST00000364404 120 ntBASIC0.92□□□□□ -2.26
EPHB3P54753 MIR548E-201ENST00000408287 88 ntBASIC0.92□□□□□ -2.26
EPHB3P54753 MIR582-201ENST00000365731 98 ntBASIC0.91□□□□□ -2.26
EPHB3P54753 RNA5SP222-201ENST00000411039 105 ntBASIC0.91□□□□□ -2.26
EPHB3P54753 MIR4473-201ENST00000583731 91 ntBASIC0.91□□□□□ -2.26
EPHB3P54753 SNORA70.25-201ENST00000612741 95 ntBASIC0.91□□□□□ -2.26
EPHB3P54753 MIR5000-201ENST00000577717 103 ntBASIC0.9□□□□□ -2.27
EPHB3P54753 MIR5706-201ENST00000579841 80 ntBASIC0.9□□□□□ -2.27
EPHB3P54753 RNU1-29P-201ENST00000606574 126 ntBASIC0.9□□□□□ -2.27
EPHB3P54753 U2.7-201ENST00000619197 100 ntBASIC0.9□□□□□ -2.27
EPHB3P54753 uc_338.10-201ENST00000621872 182 ntBASIC0.9□□□□□ -2.27
EPHB3P54753 SNORA33.1-201ENST00000364957 130 ntBASIC0.89□□□□□ -2.27
EPHB3P54753 RNU6-122P-201ENST00000516818 107 ntBASIC0.89□□□□□ -2.27
EPHB3P54753 MIR466-201ENST00000580653 84 ntBASIC0.89□□□□□ -2.27
EPHB3P54753 RNU6-92P-201ENST00000605893 104 ntBASIC0.89□□□□□ -2.27
EPHB3P54753 RNU6-829P-201ENST00000363700 112 ntBASIC0.88□□□□□ -2.27
EPHB3P54753 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
EPHB3P54753 RNU7-174P-201ENST00000516248 59 ntBASIC0.88□□□□□ -2.27
EPHB3P54753 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.87□□□□□ -2.27
EPHB3P54753 Y_RNA.125-201ENST00000363371 111 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 RNA5SP517-201ENST00000364724 117 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 RNY1P8-201ENST00000383970 114 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 MIR140-201ENST00000385282 100 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 HMGN2P22-201ENST00000427588 175 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 RNA5SP436-201ENST00000516020 115 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 MIR4752-201ENST00000579672 72 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 MIR548V-201ENST00000584165 80 ntBASIC0.87□□□□□ -2.27
EPHB3P54753 RNU6-1079P-201ENST00000362861 110 ntBASIC0.86□□□□□ -2.27
EPHB3P54753 RNU6-698P-201ENST00000363523 107 ntBASIC0.86□□□□□ -2.27
EPHB3P54753 RNU6-34P-201ENST00000364874 107 ntBASIC0.86□□□□□ -2.27
EPHB3P54753 RNA5SP480-201ENST00000516840 109 ntBASIC0.86□□□□□ -2.27
EPHB3P54753 PVT1_3.1-201ENST00000620853 95 ntBASIC0.86□□□□□ -2.27
EPHB3P54753 Y_RNA.540-201ENST00000384638 111 ntBASIC0.85□□□□□ -2.27
EPHB3P54753 MIR517B-201ENST00000385102 67 ntBASIC0.85□□□□□ -2.27
EPHB3P54753 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
EPHB3P54753 SNORD60.1-201ENST00000362451 73 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 RNU6-614P-201ENST00000384369 107 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 MIR548C-201ENST00000384815 97 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 MIR598-201ENST00000384868 97 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 MIR630-201ENST00000384957 97 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 SNORA75.1-201ENST00000391130 148 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 U6.59-201ENST00000615686 107 ntBASIC0.84□□□□□ -2.27
EPHB3P54753 SNORD118-201ENST00000363593 134 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 Y_RNA.236-201ENST00000364427 111 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 SNORA36.2-201ENST00000384004 127 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 SNORD113-2-201ENST00000391082 72 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 AC244090.1-201ENST00000441884 93 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 AC069271.1-201ENST00000445577 156 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 U4.4-201ENST00000620626 117 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
EPHB3P54753 RNU6-141P-201ENST00000410499 105 ntBASIC0.82□□□□□ -2.28
EPHB3P54753 PSMC1P5-201ENST00000512850 177 ntBASIC0.82□□□□□ -2.28
EPHB3P54753 MIR3938-201ENST00000582157 103 ntBASIC0.82□□□□□ -2.28
EPHB3P54753 MIR6835-201ENST00000621552 64 ntBASIC0.82□□□□□ -2.28
EPHB3P54753 MIR20A-201ENST00000362279 71 ntBASIC0.81□□□□□ -2.28
EPHB3P54753 MIR516B1-201ENST00000385211 90 ntBASIC0.81□□□□□ -2.28
EPHB3P54753 SNORA25.18-201ENST00000607153 114 ntBASIC0.81□□□□□ -2.28
EPHB3P54753 RNU6-446P-201ENST00000362827 106 ntBASIC0.8□□□□□ -2.28
EPHB3P54753 SNORA40.8-201ENST00000411034 126 ntBASIC0.8□□□□□ -2.28
EPHB3P54753 MIR4714-201ENST00000580728 77 ntBASIC0.8□□□□□ -2.28
EPHB3P54753 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
EPHB3P54753 U7.6-201ENST00000610841 64 ntBASIC0.8□□□□□ -2.28
EPHB3P54753 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
EPHB3P54753 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
EPHB3P54753 RNU6-848P-201ENST00000515948 107 ntBASIC0.79□□□□□ -2.28
EPHB3P54753 RNU6-617P-201ENST00000516147 107 ntBASIC0.79□□□□□ -2.28
EPHB3P54753 RNU6-473P-201ENST00000516164 107 ntBASIC0.79□□□□□ -2.28
EPHB3P54753 RNU6-1049P-201ENST00000516414 107 ntBASIC0.79□□□□□ -2.28
EPHB3P54753 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
EPHB3P54753 SNORA2A-201ENST00000383885 135 ntBASIC0.78□□□□□ -2.28
EPHB3P54753 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
EPHB3P54753 SNORD2-201ENST00000459163 69 ntBASIC0.78□□□□□ -2.28
EPHB3P54753 CYP3A54P-201ENST00000566950 75 ntBASIC0.78□□□□□ -2.28
EPHB3P54753 U6.96-201ENST00000636425 70 ntBASIC0.78□□□□□ -2.28
EPHB3P54753 SNORD114-29-201ENST00000364819 70 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 MIR508-201ENST00000384857 115 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 AC243829.6-201ENST00000612652 106 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 MIR6779-201ENST00000617283 64 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 AC243829.3-201ENST00000622177 108 ntBASIC0.77□□□□□ -2.29
EPHB3P54753 SNORD114-26-201ENST00000363543 72 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 Y_RNA.246-201ENST00000364495 108 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 MIR518A1-201ENST00000385068 85 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 SNORD71-201ENST00000411292 86 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 AL021921.1-201ENST00000442774 93 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 AC090617.8-201ENST00000623339 167 ntBASIC0.76□□□□□ -2.29
EPHB3P54753 RNU6-229P-201ENST00000516614 102 ntBASIC0.75□□□□□ -2.29
EPHB3P54753 SNORA49-201ENST00000386157 136 ntBASIC0.74□□□□□ -2.29
EPHB3P54753 MIR4677-201ENST00000584153 80 ntBASIC0.74□□□□□ -2.29
EPHB3P54753 MIR6755-201ENST00000619993 66 ntBASIC0.74□□□□□ -2.29
EPHB3P54753 Y_RNA.325-201ENST00000365171 122 ntBASIC0.73□□□□□ -2.29
EPHB3P54753 Y_RNA.423-201ENST00000384057 113 ntBASIC0.73□□□□□ -2.29
EPHB3P54753 MIR501-201ENST00000390204 84 ntBASIC0.73□□□□□ -2.29
EPHB3P54753 RNU7-188P-201ENST00000517063 64 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 201 ms