Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU7-129P-201ENST00000516128 62 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RNU6-1232P-201ENST00000516299 86 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RNU6-687P-201ENST00000516443 89 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RN7SL793P-201ENST00000583259 296 ntBASIC0.62□□□□□ -2.31
LIG3P49916 MIR501-201ENST00000390204 84 ntBASIC0.61□□□□□ -2.31
LIG3P49916 MIRLET7D-201ENST00000362263 87 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR516B1-201ENST00000385211 90 ntBASIC0.6□□□□□ -2.31
LIG3P49916 AL157398.1-201ENST00000452981 186 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR4677-201ENST00000584153 80 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR6779-201ENST00000617283 64 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR6513-201ENST00000621188 64 ntBASIC0.6□□□□□ -2.31
LIG3P49916 Y_RNA.250-201ENST00000364542 110 ntBASIC0.58□□□□□ -2.32
LIG3P49916 RNU6-634P-201ENST00000459134 106 ntBASIC0.58□□□□□ -2.32
LIG3P49916 RNA5SP147-201ENST00000516493 109 ntBASIC0.58□□□□□ -2.32
LIG3P49916 SNORA40.17-201ENST00000517256 115 ntBASIC0.58□□□□□ -2.32
LIG3P49916 MIR548AD-201ENST00000584780 82 ntBASIC0.58□□□□□ -2.32
LIG3P49916 MIR103A1-201ENST00000362165 78 ntBASIC0.57□□□□□ -2.32
LIG3P49916 MIR20A-201ENST00000362279 71 ntBASIC0.57□□□□□ -2.32
LIG3P49916 SNORA9.1-201ENST00000362412 131 ntBASIC0.57□□□□□ -2.32
LIG3P49916 SNORD114-29-201ENST00000364819 70 ntBASIC0.57□□□□□ -2.32
LIG3P49916 RNA5SP347-201ENST00000362445 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SNORD115-22-201ENST00000364456 82 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SNORA63.6-201ENST00000364921 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC244090.1-201ENST00000441884 93 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC021146.9-201ENST00000512503 156 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC084368.1-201ENST00000620935 65 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
LIG3P49916 SNORD115-31-201ENST00000365318 82 ntBASIC0.55□□□□□ -2.32
LIG3P49916 MIR548E-201ENST00000408287 88 ntBASIC0.55□□□□□ -2.32
LIG3P49916 AC073261.1-201ENST00000429409 121 ntBASIC0.55□□□□□ -2.32
LIG3P49916 MIR499B-201ENST00000636498 73 ntBASIC0.55□□□□□ -2.32
LIG3P49916 Y_RNA.205-201ENST00000364128 113 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU6-895P-201ENST00000384125 103 ntBASIC0.54□□□□□ -2.32
LIG3P49916 SNORD45A-201ENST00000384512 84 ntBASIC0.54□□□□□ -2.32
LIG3P49916 snoU13.13-201ENST00000458842 104 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU6-881P-201ENST00000516813 102 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU7-188P-201ENST00000517063 64 ntBASIC0.54□□□□□ -2.32
LIG3P49916 SNORD114-23-201ENST00000363536 72 ntBASIC0.53□□□□□ -2.32
LIG3P49916 MIR582-201ENST00000365731 98 ntBASIC0.53□□□□□ -2.32
LIG3P49916 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
LIG3P49916 RNA5SP62-201ENST00000363457 110 ntBASIC0.52□□□□□ -2.33
LIG3P49916 MIR193B-201ENST00000384907 83 ntBASIC0.52□□□□□ -2.33
LIG3P49916 RNU6-982P-201ENST00000516216 102 ntBASIC0.52□□□□□ -2.33
LIG3P49916 AC090625.1-201ENST00000357130 210 ntBASIC0.51□□□□□ -2.33
LIG3P49916 SNORD113.1-201ENST00000363280 73 ntBASIC0.51□□□□□ -2.33
LIG3P49916 SNORD2-201ENST00000459163 69 ntBASIC0.51□□□□□ -2.33
LIG3P49916 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.51□□□□□ -2.33
LIG3P49916 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
LIG3P49916 RNU6-1162P-201ENST00000384443 104 ntBASIC0.5□□□□□ -2.33
LIG3P49916 MIR6739-201ENST00000622461 75 ntBASIC0.5□□□□□ -2.33
LIG3P49916 SNORA15B-2-201ENST00000384058 135 ntBASIC0.49□□□□□ -2.33
LIG3P49916 RNU6-815P-201ENST00000384080 113 ntBASIC0.49□□□□□ -2.33
LIG3P49916 SNORA15B-1-201ENST00000384334 135 ntBASIC0.49□□□□□ -2.33
LIG3P49916 SNORA75.1-201ENST00000391130 148 ntBASIC0.49□□□□□ -2.33
LIG3P49916 MIR4711-201ENST00000578274 70 ntBASIC0.49□□□□□ -2.33
LIG3P49916 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
LIG3P49916 AC010487.4-201ENST00000637027 61 ntBASIC0.49□□□□□ -2.33
LIG3P49916 RNU6-1327P-201ENST00000365302 105 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNU6-540P-201ENST00000384622 101 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
LIG3P49916 MTND4LP1-201ENST00000446263 157 ntBASIC0.48□□□□□ -2.33
LIG3P49916 MIR1273G-201ENST00000577677 100 ntBASIC0.48□□□□□ -2.33
LIG3P49916 AL109933.3-201ENST00000619095 188 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNA5SP325-201ENST00000363756 130 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-645P-201ENST00000364649 106 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-127P-201ENST00000390897 107 ntBASIC0.47□□□□□ -2.33
LIG3P49916 MIR876-201ENST00000401147 81 ntBASIC0.47□□□□□ -2.33
LIG3P49916 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
LIG3P49916 AC069113.3-201ENST00000521019 150 ntBASIC0.47□□□□□ -2.33
LIG3P49916 MIR3925-201ENST00000584674 77 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-1216P-201ENST00000362590 107 ntBASIC0.46□□□□□ -2.34
LIG3P49916 MIR521-2-201ENST00000384818 87 ntBASIC0.46□□□□□ -2.34
LIG3P49916 Y_RNA.633-201ENST00000459107 95 ntBASIC0.46□□□□□ -2.34
LIG3P49916 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
LIG3P49916 SNORD30.1-201ENST00000391309 70 ntBASIC0.45□□□□□ -2.34
LIG3P49916 SCARNA11.2-201ENST00000517183 154 ntBASIC0.45□□□□□ -2.34
LIG3P49916 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
LIG3P49916 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-649P-201ENST00000384463 107 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-663P-201ENST00000391105 106 ntBASIC0.44□□□□□ -2.34
LIG3P49916 AC114801.3-201ENST00000510231 177 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-782P-201ENST00000516852 104 ntBASIC0.44□□□□□ -2.34
LIG3P49916 SNORD116-24-201ENST00000384549 92 ntBASIC0.43□□□□□ -2.34
LIG3P49916 RNU6-175P-201ENST00000516896 107 ntBASIC0.43□□□□□ -2.34
LIG3P49916 MIR924-201ENST00000638017 53 ntBASIC0.43□□□□□ -2.34
LIG3P49916 RNU6-668P-201ENST00000364180 107 ntBASIC0.42□□□□□ -2.34
LIG3P49916 RNU6-656P-201ENST00000516785 107 ntBASIC0.42□□□□□ -2.34
LIG3P49916 AC139453.2-201ENST00000487255 133 ntBASIC0.41□□□□□ -2.34
LIG3P49916 RNU6-539P-201ENST00000516665 103 ntBASIC0.41□□□□□ -2.34
LIG3P49916 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
LIG3P49916 AC090617.8-201ENST00000623339 167 ntBASIC0.41□□□□□ -2.34
LIG3P49916 SNORA33.1-201ENST00000364957 130 ntBASIC0.4□□□□□ -2.35
LIG3P49916 MIR643-201ENST00000385267 97 ntBASIC0.4□□□□□ -2.35
LIG3P49916 RN7SL660P-201ENST00000614852 299 ntBASIC0.4□□□□□ -2.35
LIG3P49916 U6.96-201ENST00000636425 70 ntBASIC0.4□□□□□ -2.35
LIG3P49916 RNU6-1036P-201ENST00000383959 104 ntBASIC0.39□□□□□ -2.35
LIG3P49916 SNORA49-201ENST00000386157 136 ntBASIC0.39□□□□□ -2.35
LIG3P49916 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
LIG3P49916 MIR4315-1-201ENST00000636800 73 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 244.1 ms