Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AC022709.1-201ENST00000615967 87 ntBASIC0.56□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR548E-201ENST00000408287 88 ntBASIC0.55□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 AC073261.1-201ENST00000429409 121 ntBASIC0.55□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 snoU13.13-201ENST00000458842 104 ntBASIC0.55□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNA5SP220-201ENST00000516298 104 ntBASIC0.55□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR6734-201ENST00000621166 68 ntBASIC0.55□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 SNORD113.1-201ENST00000363280 73 ntBASIC0.54□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNU6-540P-201ENST00000384622 101 ntBASIC0.54□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNU7-129P-201ENST00000516128 62 ntBASIC0.54□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNU6-881P-201ENST00000516813 102 ntBASIC0.54□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR499B-201ENST00000636498 73 ntBASIC0.54□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNU6-982P-201ENST00000516216 102 ntBASIC0.53□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR20A-201ENST00000362279 71 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNA5SP347-201ENST00000362445 119 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.250-201ENST00000364542 110 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 SNORA63.6-201ENST00000364921 119 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-895P-201ENST00000384125 103 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 AC021146.9-201ENST00000512503 156 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU7-188P-201ENST00000517063 64 ntBASIC0.52□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 SNORD114-29-201ENST00000364819 70 ntBASIC0.51□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 AC244090.1-201ENST00000441884 93 ntBASIC0.51□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 AC084368.1-201ENST00000620935 65 ntBASIC0.51□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 MIR6513-201ENST00000621188 64 ntBASIC0.51□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 MIR6739-201ENST00000622461 75 ntBASIC0.51□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-42P-201ENST00000384165 107 ntBASIC0.5□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.5□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-645P-201ENST00000364649 106 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-815P-201ENST00000384080 113 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 MIR216A-201ENST00000385063 110 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNA5SP193-201ENST00000410353 107 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.633-201ENST00000459107 95 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 AC114801.3-201ENST00000510231 177 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 MIR3925-201ENST00000584674 77 ntBASIC0.49□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 SNORA9.1-201ENST00000362412 131 ntBASIC0.48□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-663P-201ENST00000391105 106 ntBASIC0.48□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-1216P-201ENST00000362590 107 ntBASIC0.47□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.355-201ENST00000365462 98 ntBASIC0.47□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-1162P-201ENST00000384443 104 ntBASIC0.47□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 SNORD30.1-201ENST00000391309 70 ntBASIC0.47□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNU6-656P-201ENST00000516785 107 ntBASIC0.47□□□□□ -2.33
NPHP3-ACAD11A0A0J9YXS1 RNA5SP62-201ENST00000363457 110 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-649P-201ENST00000384463 107 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR521-2-201ENST00000384818 87 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR936-201ENST00000401264 98 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-175P-201ENST00000516896 107 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 AC243829.3-201ENST00000622177 108 ntBASIC0.46□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA15B-2-201ENST00000384058 135 ntBASIC0.45□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA15B-1-201ENST00000384334 135 ntBASIC0.45□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORD116-24-201ENST00000384549 92 ntBASIC0.45□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR4711-201ENST00000578274 70 ntBASIC0.45□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 AC090625.1-201ENST00000357130 210 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-127P-201ENST00000390897 107 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR876-201ENST00000401147 81 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MTND4LP1-201ENST00000446263 157 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-539P-201ENST00000516665 103 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RN7SL660P-201ENST00000614852 299 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 MIR6515-201ENST00000619843 57 ntBASIC0.44□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 AC139453.2-201ENST00000487255 133 ntBASIC0.43□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SCARNA11.2-201ENST00000517183 154 ntBASIC0.43□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 AC069113.3-201ENST00000521019 150 ntBASIC0.43□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA33.1-201ENST00000364957 130 ntBASIC0.42□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA49-201ENST00000386157 136 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORA75.1-201ENST00000391130 148 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 SNORD2-201ENST00000459163 69 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-782P-201ENST00000516852 104 ntBASIC0.41□□□□□ -2.34
NPHP3-ACAD11A0A0J9YXS1 RNU6-668P-201ENST00000364180 107 ntBASIC0.4□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 AC243829.6-201ENST00000612652 106 ntBASIC0.4□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 U6.111-201ENST00000636093 83 ntBASIC0.4□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 RNU6-1036P-201ENST00000383959 104 ntBASIC0.39□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 RNU6-630P-201ENST00000391258 106 ntBASIC0.39□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.443-201ENST00000384135 111 ntBASIC0.38□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 MIR643-201ENST00000385267 97 ntBASIC0.38□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 U6.96-201ENST00000636425 70 ntBASIC0.38□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 AL109933.3-201ENST00000619095 188 ntBASIC0.36□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 RNU6-800P-201ENST00000384473 103 ntBASIC0.35□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 AC005520.4-201ENST00000604337 90 ntBASIC0.35□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 PVT1_3.1-201ENST00000620853 95 ntBASIC0.35□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 MIR4315-1-201ENST00000636800 73 ntBASIC0.35□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 MIR4315-2-201ENST00000640925 73 ntBASIC0.35□□□□□ -2.35
NPHP3-ACAD11A0A0J9YXS1 MIR106A-201ENST00000384870 81 ntBASIC0.34□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 snoU13.18-201ENST00000459483 104 ntBASIC0.34□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 RNU6-1089P-201ENST00000516473 104 ntBASIC0.34□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 AC090617.8-201ENST00000623339 167 ntBASIC0.34□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 SNORA25.4-201ENST00000363666 124 ntBASIC0.33□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.386-201ENST00000383913 105 ntBASIC0.33□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 MIR598-201ENST00000384868 97 ntBASIC0.33□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 MIR489-201ENST00000384923 84 ntBASIC0.33□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 MIR548H2-201ENST00000408874 88 ntBASIC0.33□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 RNU6-590P-201ENST00000365039 107 ntBASIC0.32□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 MIR548C-201ENST00000384815 97 ntBASIC0.32□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
NPHP3-ACAD11A0A0J9YXS1 MIR6773-201ENST00000612812 74 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms