Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-813P-201ENST00000384691 107 ntBASIC-0.72□□□□□ -2.52
DDX28Q9NUL7 MIR548A3-201ENST00000385297 97 ntBASIC-0.72□□□□□ -2.52
DDX28Q9NUL7 SNORD42B-201ENST00000458893 67 ntBASIC-0.72□□□□□ -2.52
DDX28Q9NUL7 RNU6-721P-201ENST00000410155 105 ntBASIC-0.73□□□□□ -2.53
DDX28Q9NUL7 SNORA13-201ENST00000458790 133 ntBASIC-0.73□□□□□ -2.53
DDX28Q9NUL7 MIR8068-201ENST00000618032 68 ntBASIC-0.73□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 MIR548U-201ENST00000390728 81 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 RNU6-907P-201ENST00000390924 102 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 FGF7P7-201ENST00000514120 227 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 RNU6-659P-201ENST00000516454 104 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 RNU6-719P-201ENST00000516671 104 ntBASIC-0.74□□□□□ -2.53
DDX28Q9NUL7 RNU4-36P-201ENST00000364294 144 ntBASIC-0.75□□□□□ -2.53
DDX28Q9NUL7 AC021146.6-201ENST00000514659 117 ntBASIC-0.75□□□□□ -2.53
DDX28Q9NUL7 SNORD33.1-201ENST00000516213 88 ntBASIC-0.75□□□□□ -2.53
DDX28Q9NUL7 AC103810.7-201ENST00000607821 91 ntBASIC-0.75□□□□□ -2.53
DDX28Q9NUL7 RNU6-502P-201ENST00000362419 108 ntBASIC-0.76□□□□□ -2.53
DDX28Q9NUL7 RNU6-973P-201ENST00000364690 107 ntBASIC-0.76□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.77□□□□□ -2.53
DDX28Q9NUL7 RNU6-132P-201ENST00000383863 107 ntBASIC-0.77□□□□□ -2.53
DDX28Q9NUL7 SNORD22.1-201ENST00000516331 125 ntBASIC-0.77□□□□□ -2.53
DDX28Q9NUL7 SNORA63.2-201ENST00000362603 126 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 SNORD4B-201ENST00000459083 72 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 RNU6-881P-201ENST00000516813 102 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 MIR3179-1-201ENST00000578940 84 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 MIR3179-2-201ENST00000579107 84 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 MIR3179-3-201ENST00000579566 84 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 MIR3179-4-201ENST00000617599 84 ntBASIC-0.78□□□□□ -2.53
DDX28Q9NUL7 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 MIR3064-201ENST00000581130 66 ntBASIC-0.79□□□□□ -2.54
DDX28Q9NUL7 RNU6-905P-201ENST00000384434 107 ntBASIC-0.8□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.8□□□□□ -2.54
DDX28Q9NUL7 MIR517B-201ENST00000385102 67 ntBASIC-0.8□□□□□ -2.54
DDX28Q9NUL7 MIR4777-201ENST00000583710 86 ntBASIC-0.8□□□□□ -2.54
DDX28Q9NUL7 AC104996.3-201ENST00000590718 94 ntBASIC-0.8□□□□□ -2.54
DDX28Q9NUL7 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 MIR518B-201ENST00000385127 83 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 RNU6-519P-201ENST00000410590 108 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 RNU6-412P-201ENST00000516434 106 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 MIR548Z-201ENST00000584743 97 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 MIR6773-201ENST00000612812 74 ntBASIC-0.81□□□□□ -2.54
DDX28Q9NUL7 RNU6-495P-201ENST00000362995 107 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 SNORD114-25-201ENST00000363742 72 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 RNU6-337P-201ENST00000391243 106 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 RNU6-592P-201ENST00000411333 103 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 AP000533.3-201ENST00000447704 118 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 MIR3140-201ENST00000583685 90 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 MIR6854-201ENST00000614935 69 ntBASIC-0.82□□□□□ -2.54
DDX28Q9NUL7 RNU6-990P-201ENST00000364385 104 ntBASIC-0.83□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.83□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.83□□□□□ -2.54
DDX28Q9NUL7 AC022137.1-201ENST00000483735 151 ntBASIC-0.83□□□□□ -2.54
DDX28Q9NUL7 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.83□□□□□ -2.54
DDX28Q9NUL7 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORD74.6-201ENST00000364796 70 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORA63.6-201ENST00000364921 119 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORD116-14-201ENST00000383894 92 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORD116-17-201ENST00000383929 92 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORD116-15-201ENST00000384445 92 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 RNU6-880P-201ENST00000384526 107 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNORD116-19-201ENST00000384729 92 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 SNX3P1X-201ENST00000414887 175 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 RNU6-795P-201ENST00000516323 103 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 RNU6-62P-201ENST00000516526 102 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 AC012531.4-201ENST00000616509 177 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 snoR1.1-201ENST00000628177 80 ntBASIC-0.84□□□□□ -2.54
DDX28Q9NUL7 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.85□□□□□ -2.55
DDX28Q9NUL7 MIRLET7B-201ENST00000385140 83 ntBASIC-0.85□□□□□ -2.55
DDX28Q9NUL7 MIR196A1-201ENST00000388006 70 ntBASIC-0.85□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 SNORD115-23-201ENST00000364461 82 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 SNORA24B-201ENST00000384176 131 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 SNORD116-21-201ENST00000384507 92 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 RNU6-972P-201ENST00000391208 107 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 AL500527.2-201ENST00000454105 95 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 SCARNA23-201ENST00000516060 130 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.86□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.87□□□□□ -2.55
DDX28Q9NUL7 SNORD90-201ENST00000391145 111 ntBASIC-0.87□□□□□ -2.55
DDX28Q9NUL7 RNU7-24P-201ENST00000458867 62 ntBASIC-0.87□□□□□ -2.55
DDX28Q9NUL7 AC090617.8-201ENST00000623339 167 ntBASIC-0.87□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.88□□□□□ -2.55
DDX28Q9NUL7 SNORD58A-201ENST00000383875 65 ntBASIC-0.88□□□□□ -2.55
DDX28Q9NUL7 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.88□□□□□ -2.55
DDX28Q9NUL7 RNU6-209P-201ENST00000384118 107 ntBASIC-0.89□□□□□ -2.55
DDX28Q9NUL7 RNY1P7-201ENST00000384743 110 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 199.5 ms