Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 RNU6-161P-201ENST00000363051 106 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 RNA5SP173-201ENST00000364857 136 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 RNU6-573P-201ENST00000383938 106 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 Y_RNA.426-201ENST00000384068 113 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 SNORA24B-201ENST00000384176 131 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 MIR216B-201ENST00000390186 82 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 MIR4514-201ENST00000581410 57 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 AC069503.3-201ENST00000618674 145 ntBASIC0.28□□□□□ -2.36
FOXN4Q96NZ1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
FOXN4Q96NZ1 RNU6-1276P-201ENST00000365372 104 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 RNU6-242P-201ENST00000384359 107 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 RNU6-1177P-201ENST00000391058 104 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.607-201ENST00000410597 98 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 HMGN2P22-201ENST00000427588 175 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 MIR5706-201ENST00000579841 80 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 MIR499B-201ENST00000636498 73 ntBASIC0.27□□□□□ -2.37
FOXN4Q96NZ1 AC090625.1-201ENST00000357130 210 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 RNU6-624P-201ENST00000363411 107 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 RNU6-815P-201ENST00000384080 113 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 AC073261.1-201ENST00000429409 121 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 RNU7-171P-201ENST00000459581 62 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 MIR548AE1-201ENST00000583292 70 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 AL109933.3-201ENST00000619095 188 ntBASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
FOXN4Q96NZ1 RNU6-208P-201ENST00000362431 107 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 RNU6-824P-201ENST00000363724 104 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 RNA5SP128-201ENST00000365305 116 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 RNU6-652P-201ENST00000365488 107 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.371-201ENST00000365591 113 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.437-201ENST00000384113 113 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 RNU6-1152P-201ENST00000384576 107 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 MIR501-201ENST00000390204 84 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 SNORD77.2-201ENST00000391045 68 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 SNORD42B-201ENST00000458893 67 ntBASIC0.25□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.125-201ENST00000363371 111 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 RNU6-478P-201ENST00000363904 110 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.316-201ENST00000365118 111 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 MIR1302-4-201ENST00000408701 150 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 RNU6-863P-201ENST00000515989 104 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 SNORA62.5-201ENST00000516634 120 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 MIR4773-1-201ENST00000637203 78 ntBASIC0.24□□□□□ -2.37
FOXN4Q96NZ1 SNORA9.1-201ENST00000362412 131 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.313-201ENST00000365095 103 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 RNU6-382P-201ENST00000365181 106 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.374-201ENST00000365606 101 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 RNU6-787P-201ENST00000384032 107 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 RNU6-129P-201ENST00000391022 107 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 AC108740.1-201ENST00000498629 225 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 AC097510.1-201ENST00000510945 133 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 uc_338.10-201ENST00000621872 182 ntBASIC0.23□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.12-201ENST00000362393 112 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-495P-201ENST00000362995 107 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 Y_RNA.407-201ENST00000383986 113 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 MIR516B1-201ENST00000385211 90 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 MIR652-201ENST00000385278 98 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-848P-201ENST00000515948 107 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-617P-201ENST00000516147 107 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-473P-201ENST00000516164 107 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-1049P-201ENST00000516414 107 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 MIR4677-201ENST00000584153 80 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 U7.6-201ENST00000610841 64 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.22□□□□□ -2.37
FOXN4Q96NZ1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 RNU6-154P-201ENST00000384306 106 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 MIR643-201ENST00000385267 97 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 RNU6-127P-201ENST00000390897 107 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 AC069113.3-201ENST00000521019 150 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 MIR4666B-201ENST00000578142 81 ntBASIC0.21□□□□□ -2.38
FOXN4Q96NZ1 Y_RNA.264-201ENST00000364665 102 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 RNU6-686P-201ENST00000364839 107 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 SNORD75.2-201ENST00000408784 58 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 RNU6-557P-201ENST00000516842 110 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 MIR548AD-201ENST00000584780 82 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 U6.81-201ENST00000612550 106 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 MIR1245B-201ENST00000636115 69 ntBASIC0.2□□□□□ -2.38
FOXN4Q96NZ1 RNU6-340P-201ENST00000364005 107 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 Y_RNA.219-201ENST00000364232 113 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 RNU6-1124P-201ENST00000384169 107 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 MIR203A-201ENST00000384836 110 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 RNU6-274P-201ENST00000459566 107 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 YWHAEP3-201ENST00000582767 121 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 MIR3925-201ENST00000584674 77 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 AC023932.2-201ENST00000603176 175 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 AC084368.1-201ENST00000620935 65 ntBASIC0.19□□□□□ -2.38
FOXN4Q96NZ1 MIRLET7A1-201ENST00000362295 80 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 AL691482.2-201ENST00000457453 84 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 RNU7-24P-201ENST00000458867 62 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 Y_RNA.660-201ENST00000516002 120 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 RNU7-188P-201ENST00000517063 64 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 MIR4484-201ENST00000582855 83 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 MIR2909-201ENST00000617113 69 ntBASIC0.18□□□□□ -2.38
FOXN4Q96NZ1 RNU6-228P-201ENST00000362700 106 ntBASIC0.17□□□□□ -2.38
FOXN4Q96NZ1 RNU6-990P-201ENST00000364385 104 ntBASIC0.17□□□□□ -2.38
FOXN4Q96NZ1 RNA5SP63-201ENST00000391225 112 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms