Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR517B-201ENST00000385102 67 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 AP000533.3-201ENST00000447704 118 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 RNA5SP180-201ENST00000516181 101 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-463P-201ENST00000384340 107 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-394P-201ENST00000410735 107 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 AL513043.2-201ENST00000573941 143 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-832P-201ENST00000363319 107 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 AC004792.1-201ENST00000614523 137 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 SNORA63.2-201ENST00000362603 126 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNY3P2-201ENST00000362918 102 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 MIR569-201ENST00000385228 96 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNU7-85P-201ENST00000458851 63 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNU6-804P-201ENST00000384286 107 ntBASIC-1.5□□□□□ -2.65
HDDC3Q8N4P3 MIR8068-201ENST00000618032 68 ntBASIC-1.5□□□□□ -2.65
HDDC3Q8N4P3 RNU6-379P-201ENST00000363813 104 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-388P-201ENST00000517012 105 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-389P-201ENST00000517048 105 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-158P-201ENST00000517104 100 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 MIR4439-201ENST00000583746 80 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-132P-201ENST00000383863 107 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 MIRLET7B-201ENST00000385140 83 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 MIR3144-201ENST00000579460 79 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 SNORD45B-201ENST00000364617 72 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6-592P-201ENST00000411333 103 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 AC068339.1-201ENST00000526965 141 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6-495P-201ENST00000362995 107 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 SNORD114-25-201ENST00000363742 72 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 SNORD18.2-201ENST00000459604 70 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 AC021146.9-201ENST00000512503 156 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 RNA5SP470-201ENST00000516463 106 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 MIR3140-201ENST00000583685 90 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 MIR4679-2-201ENST00000578358 77 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 MIR3064-201ENST00000581130 66 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 AC104996.3-201ENST00000590718 94 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 AL035470.1-201ENST00000622571 220 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 RNU6-644P-201ENST00000391155 98 ntBASIC-1.56□□□□□ -2.66
HDDC3Q8N4P3 SNORD115-23-201ENST00000364461 82 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNU6-772P-201ENST00000516042 105 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNA5SP272-201ENST00000516095 111 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 U6.96-201ENST00000636425 70 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 AL157777.2-201ENST00000258070 137 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-905P-201ENST00000384434 107 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-337P-201ENST00000391243 106 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-426P-201ENST00000516464 97 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 AC103810.7-201ENST00000607821 91 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNY4P27-201ENST00000363341 96 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 SNORA62.4-201ENST00000365504 151 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 RNU6-813P-201ENST00000384691 107 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 MIR548Z-201ENST00000584743 97 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 RNU6-990P-201ENST00000364385 104 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 SNORD75.2-201ENST00000408784 58 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 RNU6-519P-201ENST00000410590 108 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 RNU7-24P-201ENST00000458867 62 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 SNORD4B-201ENST00000459083 72 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 RNU6-182P-201ENST00000516970 105 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 MIR3613-201ENST00000579844 87 ntBASIC-1.63□□□□□ -2.67
HDDC3Q8N4P3 AL353621.2-201ENST00000605340 133 ntBASIC-1.63□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MIR548A1-201ENST00000385041 97 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MIR124-2-201ENST00000385081 109 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MTATP6P29-201ENST00000415057 132 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MTND4LP9-201ENST00000427694 174 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 uc_338.19-201ENST00000616808 99 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 SNORA24B-201ENST00000384176 131 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 MT-TG-201ENST00000387429 68 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 RNU6-62P-201ENST00000516526 102 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 MIR5009-201ENST00000578736 100 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 YWHAEP3-201ENST00000582767 121 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 AC006254.2-201ENST00000603259 279 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 RNU6-208P-201ENST00000362431 107 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 SNORA40-201ENST00000388090 126 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 MTND5P41-201ENST00000517498 206 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.67□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 AC140658.3-201ENST00000567603 271 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 RNU6-274P-201ENST00000459566 107 ntBASIC-1.69□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms