Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-537P-201ENST00000517277 103 ntBASIC-0.23□□□□□ -2.45
CTCFP49711 MIR3666-201ENST00000607845 111 ntBASIC-0.23□□□□□ -2.45
CTCFP49711 RNU4-63P-201ENST00000411313 118 ntBASIC-0.24□□□□□ -2.45
CTCFP49711 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.24□□□□□ -2.45
CTCFP49711 RNU6-479P-201ENST00000516348 105 ntBASIC-0.24□□□□□ -2.45
CTCFP49711 AL590491.3-201ENST00000610731 82 ntBASIC-0.24□□□□□ -2.45
CTCFP49711 SNORD114-29-201ENST00000364819 70 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 SNORD114-12-201ENST00000365400 75 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 RNU6-132P-201ENST00000383863 107 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 MIR1302-5-201ENST00000408164 150 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 SNORD4B-201ENST00000459083 72 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 RNU6-589P-201ENST00000516485 107 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.25□□□□□ -2.45
CTCFP49711 SNORD113-1-201ENST00000365321 69 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 RNU6-106P-201ENST00000384405 107 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 U3.27-201ENST00000391237 200 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 AL603908.1-201ENST00000406098 201 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 RNU6-554P-201ENST00000410466 106 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.26□□□□□ -2.45
CTCFP49711 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.27□□□□□ -2.45
CTCFP49711 MIR590-201ENST00000385008 97 ntBASIC-0.27□□□□□ -2.45
CTCFP49711 MIR3064-201ENST00000581130 66 ntBASIC-0.27□□□□□ -2.45
CTCFP49711 SNORD14C-201ENST00000365382 88 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 SNORA19-201ENST00000384737 128 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 MIR652-201ENST00000385278 98 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 RNU6-972P-201ENST00000391208 107 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 RNU6-313P-201ENST00000516317 112 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 AC145423.2-201ENST00000610631 239 ntBASIC-0.28□□□□□ -2.45
CTCFP49711 SNORA49-201ENST00000386157 136 ntBASIC-0.29□□□□□ -2.46
CTCFP49711 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.29□□□□□ -2.46
CTCFP49711 RNU6-519P-201ENST00000410590 108 ntBASIC-0.29□□□□□ -2.46
CTCFP49711 RNU6-887P-201ENST00000410660 100 ntBASIC-0.29□□□□□ -2.46
CTCFP49711 RNU6-320P-201ENST00000516511 106 ntBASIC-0.29□□□□□ -2.46
CTCFP49711 RNU6-54P-201ENST00000365563 107 ntBASIC-0.3□□□□□ -2.46
CTCFP49711 SNORD58A-201ENST00000383875 65 ntBASIC-0.3□□□□□ -2.46
CTCFP49711 MIR9-2-201ENST00000384838 87 ntBASIC-0.3□□□□□ -2.46
CTCFP49711 MIR548U-201ENST00000390728 81 ntBASIC-0.3□□□□□ -2.46
CTCFP49711 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
CTCFP49711 AC104996.3-201ENST00000590718 94 ntBASIC-0.3□□□□□ -2.46
CTCFP49711 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 SNORD126-201ENST00000459475 77 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.31□□□□□ -2.46
CTCFP49711 MIR20A-201ENST00000362279 71 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 SNORD114-11-201ENST00000363738 75 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 RNU2-51P-201ENST00000410708 197 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 AC244090.1-201ENST00000441884 93 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 FGF7P7-201ENST00000514120 227 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 MIR4263-201ENST00000584745 83 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 MIR4788-201ENST00000639104 80 ntBASIC-0.32□□□□□ -2.46
CTCFP49711 RNU4-32P-201ENST00000363404 141 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNA5SP275-201ENST00000363936 118 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 AC096531.1-201ENST00000419107 107 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNU6-719P-201ENST00000516671 104 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 MIR4432-201ENST00000581823 84 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.33□□□□□ -2.46
CTCFP49711 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 RNU6-455P-201ENST00000384681 107 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 MIR196A2-201ENST00000385189 110 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.34□□□□□ -2.46
CTCFP49711 RNU7-61P-201ENST00000515897 61 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 RNU6-109P-201ENST00000516364 107 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 RNU6-184P-201ENST00000516514 107 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.34□□□□□ -2.46
CTCFP49711 SNORA63.2-201ENST00000362603 126 ntBASIC-0.35□□□□□ -2.47
CTCFP49711 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.35□□□□□ -2.47
CTCFP49711 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.35□□□□□ -2.47
CTCFP49711 RNU6-900P-201ENST00000384498 102 ntBASIC-0.35□□□□□ -2.47
CTCFP49711 SNORD56B-201ENST00000384713 71 ntBASIC-0.35□□□□□ -2.47
CTCFP49711 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 SNORD116-10-201ENST00000363791 102 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 MIR582-201ENST00000365731 98 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 RNA5SP292-201ENST00000390974 118 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 MIR548E-201ENST00000408287 88 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 RNU6-284P-201ENST00000411105 106 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 RNU7-55P-201ENST00000459426 62 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 RNU6-762P-201ENST00000517107 102 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 MIR3140-201ENST00000583685 90 ntBASIC-0.36□□□□□ -2.47
CTCFP49711 RNU6-766P-201ENST00000362478 107 ntBASIC-0.37□□□□□ -2.47
CTCFP49711 SNORD42B-201ENST00000458893 67 ntBASIC-0.37□□□□□ -2.47
CTCFP49711 RNA5SP66-201ENST00000517178 101 ntBASIC-0.37□□□□□ -2.47
CTCFP49711 MIR4280-201ENST00000582178 76 ntBASIC-0.37□□□□□ -2.47
CTCFP49711 AL391099.1-201ENST00000624635 187 ntBASIC-0.37□□□□□ -2.47
CTCFP49711 SNORA24B-201ENST00000384176 131 ntBASIC-0.38□□□□□ -2.47
CTCFP49711 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.38□□□□□ -2.47
CTCFP49711 AC097510.1-201ENST00000510945 133 ntBASIC-0.38□□□□□ -2.47
CTCFP49711 SNORD115-25-201ENST00000362619 82 ntBASIC-0.39□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 299.2 ms