Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORD83B-201ENST00000386745 93 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 SNORD90-201ENST00000391145 111 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 SCARNA17-201ENST00000516183 144 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 RNU6-182P-201ENST00000516970 105 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 AL353621.2-201ENST00000605340 133 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 RNU6-495P-201ENST00000362995 107 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 RNA5SP331-201ENST00000364986 107 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 SNORA24B-201ENST00000384176 131 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 MIR548U-201ENST00000390728 81 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 MIR3064-201ENST00000581130 66 ntBASIC-0.94□□□□□ -2.56
RFX3P48380 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 SNORD74.6-201ENST00000364796 70 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 RNU6-431P-201ENST00000383874 107 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 MIR124-2-201ENST00000385081 109 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 SNORD64-201ENST00000386683 67 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 AC021146.9-201ENST00000512503 156 ntBASIC-0.95□□□□□ -2.56
RFX3P48380 SNORA63.2-201ENST00000362603 126 ntBASIC-0.96□□□□□ -2.56
RFX3P48380 SNORD45B-201ENST00000364617 72 ntBASIC-0.96□□□□□ -2.56
RFX3P48380 RNA5SP266-201ENST00000410273 108 ntBASIC-0.96□□□□□ -2.56
RFX3P48380 SNORD18.2-201ENST00000459604 70 ntBASIC-0.96□□□□□ -2.56
RFX3P48380 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.97□□□□□ -2.56
RFX3P48380 RNA5SP292-201ENST00000390974 118 ntBASIC-0.97□□□□□ -2.56
RFX3P48380 MIR548Z-201ENST00000584743 97 ntBASIC-0.97□□□□□ -2.56
RFX3P48380 AC104996.3-201ENST00000590718 94 ntBASIC-0.97□□□□□ -2.56
RFX3P48380 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 RNU6-644P-201ENST00000391155 98 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 AC068339.1-201ENST00000526965 141 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 MIR4464-201ENST00000580818 92 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 AC103810.7-201ENST00000607821 91 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 uc_338.19-201ENST00000616808 99 ntBASIC-0.98□□□□□ -2.57
RFX3P48380 AL157777.2-201ENST00000258070 137 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 SNORD114-17-201ENST00000364699 75 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 RNU6-772P-201ENST00000516042 105 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 RNU6-426P-201ENST00000516464 97 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 MIR4499-201ENST00000584834 69 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 MIR6738-201ENST00000619620 64 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 U6.96-201ENST00000636425 70 ntBASIC-0.99□□□□□ -2.57
RFX3P48380 RNU6-208P-201ENST00000362431 107 ntBASIC-1□□□□□ -2.57
RFX3P48380 RNU6-1051P-201ENST00000365471 102 ntBASIC-1□□□□□ -2.57
RFX3P48380 Y_RNA.491-201ENST00000384417 107 ntBASIC-1□□□□□ -2.57
RFX3P48380 Y_RNA.525-201ENST00000384570 113 ntBASIC-1□□□□□ -2.57
RFX3P48380 Y_RNA.563-201ENST00000384707 108 ntBASIC-1□□□□□ -2.57
RFX3P48380 MIR147A-201ENST00000385079 72 ntBASIC-1□□□□□ -2.57
RFX3P48380 SNORA40-201ENST00000388090 126 ntBASIC-1□□□□□ -2.57
RFX3P48380 SNORD75.2-201ENST00000408784 58 ntBASIC-1□□□□□ -2.57
RFX3P48380 MTND4LP9-201ENST00000427694 174 ntBASIC-1□□□□□ -2.57
RFX3P48380 RNA5SP147-201ENST00000516493 109 ntBASIC-1□□□□□ -2.57
RFX3P48380 MTND5P41-201ENST00000517498 206 ntBASIC-1□□□□□ -2.57
RFX3P48380 RNU6-813P-201ENST00000384691 107 ntBASIC-1.01□□□□□ -2.57
RFX3P48380 RNU7-24P-201ENST00000458867 62 ntBASIC-1.01□□□□□ -2.57
RFX3P48380 SNORD4B-201ENST00000459083 72 ntBASIC-1.01□□□□□ -2.57
RFX3P48380 AL353803.5-201ENST00000599815 141 ntBASIC-1.01□□□□□ -2.57
RFX3P48380 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.01□□□□□ -2.57
RFX3P48380 MIR382-201ENST00000637119 76 ntBASIC-1.01□□□□□ -2.57
RFX3P48380 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 RNU6-382P-201ENST00000365181 106 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 RNU6-886P-201ENST00000384319 105 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 MIR203A-201ENST00000384836 110 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 AC140658.3-201ENST00000567603 271 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 MIR4324-201ENST00000584846 72 ntBASIC-1.02□□□□□ -2.57
RFX3P48380 RNU6-10P-201ENST00000384036 107 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 MIR587-201ENST00000384845 96 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 MIR548A1-201ENST00000385041 97 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 snoU13.17-201ENST00000458802 104 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 MIR5009-201ENST00000578736 100 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 YWHAEP3-201ENST00000582767 121 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 MIR6888-201ENST00000621977 67 ntBASIC-1.03□□□□□ -2.57
RFX3P48380 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 SCARNA18B-201ENST00000458806 135 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 RNU6-795P-201ENST00000516323 103 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 RNU6-62P-201ENST00000516526 102 ntBASIC-1.04□□□□□ -2.58
RFX3P48380 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 SNORA33.1-201ENST00000364957 130 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 RNU6-519P-201ENST00000410590 108 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 RNU7-107P-201ENST00000459121 61 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 SNORA18.5-201ENST00000516616 101 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 MIR4777-201ENST00000583710 86 ntBASIC-1.05□□□□□ -2.58
RFX3P48380 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 RNU6-824P-201ENST00000363724 104 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 SNORA62.4-201ENST00000365504 151 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.06□□□□□ -2.58
RFX3P48380 AL445584.3-201ENST00000617173 78 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 MIR4773-1-201ENST00000637203 78 ntBASIC-1.06□□□□□ -2.58
RFX3P48380 RNU4-32P-201ENST00000363404 141 ntBASIC-1.07□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 228.1 ms