Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNY4P3-201ENST00000365254 95 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 RNU6-929P-201ENST00000384429 107 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 RNU6-162P-201ENST00000516228 103 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 RNU6-719P-201ENST00000516671 104 ntBASIC-0.1□□□□□ -2.43
SHMT1P34896 AC026421.1-201ENST00000519101 163 ntBASIC-0.11□□□□□ -2.43
SHMT1P34896 MIR148A-201ENST00000362215 68 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 MIR20A-201ENST00000362279 71 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 SNORD114-4-201ENST00000363962 75 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 MTATP6P29-201ENST00000415057 132 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 AL035461.1-201ENST00000421490 332 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 SNORA40.13-201ENST00000516379 120 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 SNORA18.5-201ENST00000516616 101 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 AP001318.4-201ENST00000616637 121 ntBASIC-0.12□□□□□ -2.43
SHMT1P34896 RNU4-32P-201ENST00000363404 141 ntBASIC-0.13□□□□□ -2.43
SHMT1P34896 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.13□□□□□ -2.43
SHMT1P34896 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.13□□□□□ -2.43
SHMT1P34896 MIR652-201ENST00000385278 98 ntBASIC-0.13□□□□□ -2.43
SHMT1P34896 RN7SL660P-201ENST00000614852 299 ntBASIC-0.13□□□□□ -2.43
SHMT1P34896 SNORA63.4-201ENST00000362763 126 ntBASIC-0.14□□□□□ -2.43
SHMT1P34896 RNU6-54P-201ENST00000365563 107 ntBASIC-0.14□□□□□ -2.43
SHMT1P34896 RNU6-46P-201ENST00000383860 107 ntBASIC-0.14□□□□□ -2.43
SHMT1P34896 RNA5SP292-201ENST00000390974 118 ntBASIC-0.14□□□□□ -2.43
SHMT1P34896 AC244090.1-201ENST00000441884 93 ntBASIC-0.14□□□□□ -2.43
SHMT1P34896 RNU6-32P-201ENST00000383948 107 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 RNU6-13P-201ENST00000384248 107 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 RNU6-35P-201ENST00000384530 107 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 RNU6-12P-201ENST00000384604 107 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 RNU6-41P-201ENST00000384741 107 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 MIR106A-201ENST00000384870 81 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.15□□□□□ -2.43
SHMT1P34896 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.16□□□□□ -2.44
SHMT1P34896 RNU6-302P-201ENST00000365249 107 ntBASIC-0.16□□□□□ -2.44
SHMT1P34896 MIR1236-201ENST00000408340 102 ntBASIC-0.16□□□□□ -2.44
SHMT1P34896 MIR3140-201ENST00000583685 90 ntBASIC-0.16□□□□□ -2.44
SHMT1P34896 SNORA32.1-201ENST00000364514 115 ntBASIC-0.17□□□□□ -2.44
SHMT1P34896 MIR655-201ENST00000362159 97 ntBASIC-0.18□□□□□ -2.44
SHMT1P34896 RNU6-147P-201ENST00000383983 107 ntBASIC-0.18□□□□□ -2.44
SHMT1P34896 RNU6-175P-201ENST00000516896 107 ntBASIC-0.18□□□□□ -2.44
SHMT1P34896 RNA5SP98-201ENST00000363158 137 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 RNU6-44P-201ENST00000384045 107 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 SNORA24B-201ENST00000384176 131 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 RNU6-762P-201ENST00000517107 102 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 IGLVI-20-201ENST00000519296 130 ntBASIC-0.19□□□□□ -2.44
SHMT1P34896 SNORA18.1-201ENST00000363418 128 ntBASIC-0.2□□□□□ -2.44
SHMT1P34896 SNORD2-201ENST00000459163 69 ntBASIC-0.2□□□□□ -2.44
SHMT1P34896 MIR4796-201ENST00000580742 81 ntBASIC-0.2□□□□□ -2.44
SHMT1P34896 MIR6507-201ENST00000613630 70 ntBASIC-0.2□□□□□ -2.44
SHMT1P34896 RNU5F-1-201ENST00000362507 117 ntBASIC-0.21□□□□□ -2.44
SHMT1P34896 RNU6-495P-201ENST00000362995 107 ntBASIC-0.21□□□□□ -2.44
SHMT1P34896 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.21□□□□□ -2.44
SHMT1P34896 SNORD42B-201ENST00000458893 67 ntBASIC-0.21□□□□□ -2.44
SHMT1P34896 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.22□□□□□ -2.44
SHMT1P34896 MALAT1.1-201ENST00000618249 95 ntBASIC-0.22□□□□□ -2.44
SHMT1P34896 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.23□□□□□ -2.45
SHMT1P34896 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.23□□□□□ -2.45
SHMT1P34896 AC244250.2-201ENST00000418731 148 ntBASIC-0.23□□□□□ -2.45
SHMT1P34896 RNU7-24P-201ENST00000458867 62 ntBASIC-0.23□□□□□ -2.45
SHMT1P34896 MIR5589-201ENST00000579442 60 ntBASIC-0.23□□□□□ -2.45
SHMT1P34896 SNORD114-12-201ENST00000365400 75 ntBASIC-0.24□□□□□ -2.45
SHMT1P34896 MIR519C-201ENST00000385053 87 ntBASIC-0.24□□□□□ -2.45
SHMT1P34896 SNORD90-201ENST00000391145 111 ntBASIC-0.24□□□□□ -2.45
SHMT1P34896 SNORD114-31-201ENST00000363219 75 ntBASIC-0.25□□□□□ -2.45
SHMT1P34896 SNORD75.2-201ENST00000408784 58 ntBASIC-0.25□□□□□ -2.45
SHMT1P34896 SNORD4A-201ENST00000459174 72 ntBASIC-0.25□□□□□ -2.45
SHMT1P34896 AC097510.1-201ENST00000510945 133 ntBASIC-0.25□□□□□ -2.45
SHMT1P34896 AC006254.2-201ENST00000603259 279 ntBASIC-0.25□□□□□ -2.45
SHMT1P34896 SNORD49B-201ENST00000365172 72 ntBASIC-0.26□□□□□ -2.45
SHMT1P34896 SNORD116-22-201ENST00000384430 92 ntBASIC-0.26□□□□□ -2.45
SHMT1P34896 MIR214-201ENST00000385214 110 ntBASIC-0.26□□□□□ -2.45
SHMT1P34896 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.26□□□□□ -2.45
SHMT1P34896 MIR4636-201ENST00000582271 80 ntBASIC-0.26□□□□□ -2.45
SHMT1P34896 MIR4668-201ENST00000582284 70 ntBASIC-0.26□□□□□ -2.45
SHMT1P34896 RNU6-633P-201ENST00000362612 103 ntBASIC-0.27□□□□□ -2.45
SHMT1P34896 AC145423.2-201ENST00000610631 239 ntBASIC-0.27□□□□□ -2.45
SHMT1P34896 RNU6-640P-201ENST00000363693 105 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 SNORD115-37-201ENST00000363768 82 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 RNU6-905P-201ENST00000384434 107 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 SNORA49-201ENST00000386157 136 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 MIR548E-201ENST00000408287 88 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 RNU7-153P-201ENST00000516455 62 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 AL590491.3-201ENST00000610731 82 ntBASIC-0.28□□□□□ -2.45
SHMT1P34896 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.29□□□□□ -2.46
SHMT1P34896 MIR1265-201ENST00000408444 86 ntBASIC-0.29□□□□□ -2.46
SHMT1P34896 MIR4263-201ENST00000584745 83 ntBASIC-0.29□□□□□ -2.46
SHMT1P34896 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
SHMT1P34896 SNORD115-27-201ENST00000364430 82 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 MIR582-201ENST00000365731 98 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
SHMT1P34896 RNA5SP300-201ENST00000391197 107 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 snoU13.17-201ENST00000458802 104 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 RNU6-168P-201ENST00000516189 101 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 MIR4802-201ENST00000581881 80 ntBASIC-0.3□□□□□ -2.46
SHMT1P34896 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.31□□□□□ -2.46
SHMT1P34896 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.31□□□□□ -2.46
SHMT1P34896 MIR6086-201ENST00000638065 55 ntBASIC-0.31□□□□□ -2.46
SHMT1P34896 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 313.3 ms