Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.42□□□□□ -2.64
HMGB1P09429 MIR6854-201ENST00000614935 69 ntBASIC-1.42□□□□□ -2.64
HMGB1P09429 SNORD74.6-201ENST00000364796 70 ntBASIC-1.43□□□□□ -2.64
HMGB1P09429 MIR5009-201ENST00000578736 100 ntBASIC-1.43□□□□□ -2.64
HMGB1P09429 MIR6738-201ENST00000619620 64 ntBASIC-1.43□□□□□ -2.64
HMGB1P09429 MIR548U-201ENST00000390728 81 ntBASIC-1.44□□□□□ -2.64
HMGB1P09429 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.44□□□□□ -2.64
HMGB1P09429 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.44□□□□□ -2.64
HMGB1P09429 MIR548E-201ENST00000408287 88 ntBASIC-1.44□□□□□ -2.64
HMGB1P09429 MIR4499-201ENST00000584834 69 ntBASIC-1.44□□□□□ -2.64
HMGB1P09429 AC103810.7-201ENST00000607821 91 ntBASIC-1.44□□□□□ -2.64
HMGB1P09429 RNY4P3-201ENST00000365254 95 ntBASIC-1.45□□□□□ -2.64
HMGB1P09429 AC140658.3-201ENST00000567603 271 ntBASIC-1.45□□□□□ -2.64
HMGB1P09429 Y_RNA.374-201ENST00000365606 101 ntBASIC-1.46□□□□□ -2.64
HMGB1P09429 RNU6-476P-201ENST00000384726 107 ntBASIC-1.46□□□□□ -2.64
HMGB1P09429 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.46□□□□□ -2.64
HMGB1P09429 SNORD42B-201ENST00000458893 67 ntBASIC-1.46□□□□□ -2.64
HMGB1P09429 RNU6-274P-201ENST00000459566 107 ntBASIC-1.46□□□□□ -2.64
HMGB1P09429 MIR4324-201ENST00000584846 72 ntBASIC-1.46□□□□□ -2.64
HMGB1P09429 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.47□□□□□ -2.64
HMGB1P09429 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.47□□□□□ -2.64
HMGB1P09429 RNU6-24P-201ENST00000384440 107 ntBASIC-1.47□□□□□ -2.64
HMGB1P09429 RNU6-813P-201ENST00000384691 107 ntBASIC-1.47□□□□□ -2.64
HMGB1P09429 MIR548A3-201ENST00000385297 97 ntBASIC-1.47□□□□□ -2.64
HMGB1P09429 RNU6-132P-201ENST00000383863 107 ntBASIC-1.48□□□□□ -2.65
HMGB1P09429 AC097510.1-201ENST00000510945 133 ntBASIC-1.48□□□□□ -2.65
HMGB1P09429 SNORD33.1-201ENST00000516213 88 ntBASIC-1.48□□□□□ -2.65
HMGB1P09429 MIR8068-201ENST00000618032 68 ntBASIC-1.48□□□□□ -2.65
HMGB1P09429 MIR3914-2-201ENST00000637339 95 ntBASIC-1.48□□□□□ -2.65
HMGB1P09429 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.49□□□□□ -2.65
HMGB1P09429 MIR587-201ENST00000384845 96 ntBASIC-1.49□□□□□ -2.65
HMGB1P09429 SNORD64-201ENST00000386683 67 ntBASIC-1.49□□□□□ -2.65
HMGB1P09429 RNU6-644P-201ENST00000391155 98 ntBASIC-1.49□□□□□ -2.65
HMGB1P09429 RNU6-255P-201ENST00000516957 105 ntBASIC-1.5□□□□□ -2.65
HMGB1P09429 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.51□□□□□ -2.65
HMGB1P09429 RNU6-431P-201ENST00000383874 107 ntBASIC-1.51□□□□□ -2.65
HMGB1P09429 RNU6-10P-201ENST00000384036 107 ntBASIC-1.51□□□□□ -2.65
HMGB1P09429 Y_RNA.433-201ENST00000384089 102 ntBASIC-1.52□□□□□ -2.65
HMGB1P09429 RNU6-80P-201ENST00000384195 107 ntBASIC-1.52□□□□□ -2.65
HMGB1P09429 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.52□□□□□ -2.65
HMGB1P09429 MIR147A-201ENST00000385079 72 ntBASIC-1.52□□□□□ -2.65
HMGB1P09429 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.52□□□□□ -2.65
HMGB1P09429 RNU6-905P-201ENST00000384434 107 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 RNU6-907P-201ENST00000390924 102 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 AL078595.1-201ENST00000404458 226 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 SCARNA18B-201ENST00000458806 135 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 snoR1.1-201ENST00000628177 80 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 U6.95-201ENST00000636931 70 ntBASIC-1.53□□□□□ -2.65
HMGB1P09429 SNORA63.2-201ENST00000362603 126 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 RNU6-30P-201ENST00000384561 107 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 MIR378F-201ENST00000578143 78 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 MIR3064-201ENST00000581130 66 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 MIR3140-201ENST00000583685 90 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 MIR382-201ENST00000637119 76 ntBASIC-1.54□□□□□ -2.66
HMGB1P09429 RNY1P5-201ENST00000383890 115 ntBASIC-1.55□□□□□ -2.66
HMGB1P09429 RNU6-519P-201ENST00000410590 108 ntBASIC-1.55□□□□□ -2.66
HMGB1P09429 SNORD18.2-201ENST00000459604 70 ntBASIC-1.55□□□□□ -2.66
HMGB1P09429 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.55□□□□□ -2.66
HMGB1P09429 RNA5SP470-201ENST00000516463 106 ntBASIC-1.56□□□□□ -2.66
HMGB1P09429 MIR548Z-201ENST00000584743 97 ntBASIC-1.56□□□□□ -2.66
HMGB1P09429 AC104996.3-201ENST00000590718 94 ntBASIC-1.56□□□□□ -2.66
HMGB1P09429 MIR6086-201ENST00000638065 55 ntBASIC-1.56□□□□□ -2.66
HMGB1P09429 snoU13.19-201ENST00000459148 104 ntBASIC-1.57□□□□□ -2.66
HMGB1P09429 snoU83B.1-201ENST00000517136 88 ntBASIC-1.57□□□□□ -2.66
HMGB1P09429 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.58□□□□□ -2.66
HMGB1P09429 RNU6-592P-201ENST00000411333 103 ntBASIC-1.58□□□□□ -2.66
HMGB1P09429 SNORD4B-201ENST00000459083 72 ntBASIC-1.58□□□□□ -2.66
HMGB1P09429 RNU6-795P-201ENST00000516323 103 ntBASIC-1.58□□□□□ -2.66
HMGB1P09429 RNA5SP395-201ENST00000516567 118 ntBASIC-1.58□□□□□ -2.66
HMGB1P09429 RNY1P9-201ENST00000532431 109 ntBASIC-1.59□□□□□ -2.66
HMGB1P09429 MIR3165-201ENST00000579874 75 ntBASIC-1.59□□□□□ -2.66
HMGB1P09429 RNA5SP192-201ENST00000364404 120 ntBASIC-1.6□□□□□ -2.67
HMGB1P09429 MIR4306-201ENST00000583390 91 ntBASIC-1.6□□□□□ -2.67
HMGB1P09429 MIR4777-201ENST00000583710 86 ntBASIC-1.62□□□□□ -2.67
HMGB1P09429 MIR6773-201ENST00000612812 74 ntBASIC-1.62□□□□□ -2.67
HMGB1P09429 SNORD114-17-201ENST00000364699 75 ntBASIC-1.63□□□□□ -2.67
HMGB1P09429 SNORA63.6-201ENST00000364921 119 ntBASIC-1.63□□□□□ -2.67
HMGB1P09429 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.63□□□□□ -2.67
HMGB1P09429 RNU6-794P-201ENST00000517261 64 ntBASIC-1.63□□□□□ -2.67
HMGB1P09429 SNORD115-23-201ENST00000364461 82 ntBASIC-1.64□□□□□ -2.67
HMGB1P09429 RNU6-659P-201ENST00000516454 104 ntBASIC-1.64□□□□□ -2.67
HMGB1P09429 MIR3115-201ENST00000577915 68 ntBASIC-1.64□□□□□ -2.67
HMGB1P09429 AC012531.4-201ENST00000616509 177 ntBASIC-1.64□□□□□ -2.67
HMGB1P09429 RNU6-495P-201ENST00000362995 107 ntBASIC-1.65□□□□□ -2.67
HMGB1P09429 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.65□□□□□ -2.67
HMGB1P09429 MIR124-2-201ENST00000385081 109 ntBASIC-1.65□□□□□ -2.67
HMGB1P09429 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.65□□□□□ -2.67
HMGB1P09429 RNA5SP67-201ENST00000516422 131 ntBASIC-1.65□□□□□ -2.67
HMGB1P09429 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.66□□□□□ -2.68
HMGB1P09429 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.66□□□□□ -2.68
HMGB1P09429 MIRLET7B-201ENST00000385140 83 ntBASIC-1.66□□□□□ -2.68
HMGB1P09429 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.66□□□□□ -2.68
HMGB1P09429 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.67□□□□□ -2.68
HMGB1P09429 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.67□□□□□ -2.68
HMGB1P09429 SNORA62.4-201ENST00000365504 151 ntBASIC-1.68□□□□□ -2.68
HMGB1P09429 RNU6-412P-201ENST00000516434 106 ntBASIC-1.68□□□□□ -2.68
HMGB1P09429 RNA5SP292-201ENST00000390974 118 ntBASIC-1.69□□□□□ -2.68
HMGB1P09429 RNU6-337P-201ENST00000391243 106 ntBASIC-1.69□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 251.1 ms