Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNORD90-201ENST00000391145 111 ntBASIC0.06□□□□□ -2.4
HOXD4P09016 RNU6-168P-201ENST00000516189 101 ntBASIC0.06□□□□□ -2.4
HOXD4P09016 SCARNA11.2-201ENST00000517183 154 ntBASIC0.06□□□□□ -2.4
HOXD4P09016 MIR3140-201ENST00000583685 90 ntBASIC0.06□□□□□ -2.4
HOXD4P09016 SNORA63.2-201ENST00000362603 126 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 RNU6-1051P-201ENST00000365471 102 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 Y_RNA.407-201ENST00000383986 113 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 MIR593-201ENST00000384856 100 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 MIR876-201ENST00000401147 81 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 RNA5SP89-201ENST00000410300 108 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 AC084368.1-201ENST00000620935 65 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 uc_338.10-201ENST00000621872 182 ntBASIC0.05□□□□□ -2.4
HOXD4P09016 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.05□□□□□ -2.4
HOXD4P09016 Y_RNA.437-201ENST00000384113 113 ntBASIC0.04□□□□□ -2.4
HOXD4P09016 MIR145-201ENST00000384967 88 ntBASIC0.04□□□□□ -2.4
HOXD4P09016 SNORA75.1-201ENST00000391130 148 ntBASIC0.04□□□□□ -2.4
HOXD4P09016 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.04□□□□□ -2.4
HOXD4P09016 SNORD115-27-201ENST00000364430 82 ntBASIC0.03□□□□□ -2.4
HOXD4P09016 SNORA24B-201ENST00000384176 131 ntBASIC0.03□□□□□ -2.4
HOXD4P09016 RNU6-154P-201ENST00000384306 106 ntBASIC0.03□□□□□ -2.4
HOXD4P09016 RNU7-188P-201ENST00000517063 64 ntBASIC0.03□□□□□ -2.4
HOXD4P09016 MIR4668-201ENST00000582284 70 ntBASIC0.03□□□□□ -2.4
HOXD4P09016 RNY1P7-201ENST00000384743 110 ntBASIC0.02□□□□□ -2.41
HOXD4P09016 MIR1236-201ENST00000408340 102 ntBASIC0.02□□□□□ -2.41
HOXD4P09016 RNA5SP163-201ENST00000410304 99 ntBASIC0.02□□□□□ -2.41
HOXD4P09016 RNU6-762P-201ENST00000517107 102 ntBASIC0.02□□□□□ -2.41
HOXD4P09016 MIR4796-201ENST00000580742 81 ntBASIC0.02□□□□□ -2.41
HOXD4P09016 Y_RNA.558-201ENST00000384685 113 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 MIR652-201ENST00000385278 98 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 MIR892B-201ENST00000401279 77 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 MTATP6P29-201ENST00000415057 132 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 HAR1A.1-201ENST00000459583 118 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 RNU7-153P-201ENST00000516455 62 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 MIR4743-201ENST00000584576 69 ntBASIC0.01□□□□□ -2.41
HOXD4P09016 Y_RNA.220-201ENST00000364244 109 ntBASIC0□□□□□ -2.41
HOXD4P09016 RNY4P3-201ENST00000365254 95 ntBASIC0□□□□□ -2.41
HOXD4P09016 SNORD42B-201ENST00000458893 67 ntBASIC0□□□□□ -2.41
HOXD4P09016 Y_RNA.660-201ENST00000516002 120 ntBASIC0□□□□□ -2.41
HOXD4P09016 RN7SL660P-201ENST00000614852 299 ntBASIC0□□□□□ -2.41
HOXD4P09016 MIR6514-201ENST00000622549 70 ntBASIC0□□□□□ -2.41
HOXD4P09016 MIR6086-201ENST00000638065 55 ntBASIC0□□□□□ -2.41
HOXD4P09016 SNORD114-29-201ENST00000364819 70 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 MIR519C-201ENST00000385053 87 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 RNU7-159P-201ENST00000459284 62 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 MIR4290-201ENST00000583807 95 ntBASIC-0.01□□□□□ -2.41
HOXD4P09016 RNU6-633P-201ENST00000362612 103 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 SNORD114-16-201ENST00000363044 70 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU6-219P-201ENST00000364728 107 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 SNORD116-22-201ENST00000384430 92 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU6-402P-201ENST00000410678 103 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU7-165P-201ENST00000458864 60 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU6-180P-201ENST00000516697 61 ntBASIC-0.02□□□□□ -2.41
HOXD4P09016 RNU5F-1-201ENST00000362507 117 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 RNU6-49P-201ENST00000384256 107 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 RNU6-929P-201ENST00000384429 107 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 RNU6-267P-201ENST00000516714 103 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 RNU6-175P-201ENST00000516896 107 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 CR383656.4-201ENST00000546909 122 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 MIR4636-201ENST00000582271 80 ntBASIC-0.03□□□□□ -2.41
HOXD4P09016 RNU6-495P-201ENST00000362995 107 ntBASIC-0.04□□□□□ -2.42
HOXD4P09016 MIR106A-201ENST00000384870 81 ntBASIC-0.04□□□□□ -2.42
HOXD4P09016 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
HOXD4P09016 snoU13.17-201ENST00000458802 104 ntBASIC-0.04□□□□□ -2.42
HOXD4P09016 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.04□□□□□ -2.42
HOXD4P09016 RNU6-844P-201ENST00000517175 102 ntBASIC-0.04□□□□□ -2.42
HOXD4P09016 MIR20A-201ENST00000362279 71 ntBASIC-0.05□□□□□ -2.42
HOXD4P09016 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
HOXD4P09016 MIR5589-201ENST00000579442 60 ntBASIC-0.05□□□□□ -2.42
HOXD4P09016 MIR148A-201ENST00000362215 68 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 SNORD114-4-201ENST00000363962 75 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 RNU6-497P-201ENST00000365316 104 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 MIR582-201ENST00000365731 98 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 MIR1265-201ENST00000408444 86 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 SNORD75.2-201ENST00000408784 58 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 RNY4P30-201ENST00000410216 95 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 AC244090.1-201ENST00000441884 93 ntBASIC-0.06□□□□□ -2.42
HOXD4P09016 RNU6-824P-201ENST00000363724 104 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 RNU6-675P-201ENST00000384236 104 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
HOXD4P09016 MIR548E-201ENST00000408287 88 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 RNU7-24P-201ENST00000458867 62 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 AC097510.1-201ENST00000510945 133 ntBASIC-0.07□□□□□ -2.42
HOXD4P09016 SNORD115-37-201ENST00000363768 82 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 RNU6-382P-201ENST00000365181 106 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 RNU6-302P-201ENST00000365249 107 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 IGLVI-20-201ENST00000519296 130 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 MIR548BB-201ENST00000626714 66 ntBASIC-0.08□□□□□ -2.42
HOXD4P09016 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.09□□□□□ -2.42
HOXD4P09016 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.09□□□□□ -2.42
HOXD4P09016 AC093729.1-201ENST00000513074 128 ntBASIC-0.09□□□□□ -2.42
HOXD4P09016 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.09□□□□□ -2.42
HOXD4P09016 MIR4802-201ENST00000581881 80 ntBASIC-0.09□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 220.2 ms