Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CCDC87Q9NVE4 RNU6-208P-201ENST00000362431 107 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 RNU6-478P-201ENST00000363904 110 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 MIR617-201ENST00000385030 97 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 MIR451A-201ENST00000385059 72 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 AC244098.3-201ENST00000424803 96 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 MIR2113-201ENST00000459007 91 ntBASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
CCDC87Q9NVE4 MIRLET7A1-201ENST00000362295 80 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 MIR18A-201ENST00000362310 71 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 Y_RNA.30-201ENST00000362572 97 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 RNU6-161P-201ENST00000363051 106 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 SNORD41.1-201ENST00000391000 69 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 SCARNA16.5-201ENST00000517114 183 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 AL353765.1-201ENST00000605514 183 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.25□□□□□ -2.21
CCDC87Q9NVE4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC87Q9NVE4 MIR548L-201ENST00000408303 86 ntBASIC1.23□□□□□ -2.21
CCDC87Q9NVE4 RNU6-1108P-201ENST00000516308 104 ntBASIC1.23□□□□□ -2.21
CCDC87Q9NVE4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.23□□□□□ -2.21
CCDC87Q9NVE4 MIR1285-1-201ENST00000408593 84 ntBASIC1.22□□□□□ -2.21
CCDC87Q9NVE4 SNORD90-201ENST00000391145 111 ntBASIC1.21□□□□□ -2.22
CCDC87Q9NVE4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.21□□□□□ -2.22
CCDC87Q9NVE4 MIR6828-201ENST00000636181 60 ntBASIC1.21□□□□□ -2.22
CCDC87Q9NVE4 Y_RNA.244-201ENST00000364484 109 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 RNU6-726P-201ENST00000364680 107 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 MIR193B-201ENST00000384907 83 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 RNU2-59P-201ENST00000410482 191 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 YWHAEP2-201ENST00000580066 112 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 MIR548AG2-201ENST00000581228 64 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 YWHAEP3-201ENST00000582767 121 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 MIR1297-201ENST00000637311 77 ntBASIC1.2□□□□□ -2.22
CCDC87Q9NVE4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC87Q9NVE4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC87Q9NVE4 AC097510.1-201ENST00000510945 133 ntBASIC1.19□□□□□ -2.22
CCDC87Q9NVE4 MIR3140-201ENST00000583685 90 ntBASIC1.19□□□□□ -2.22
CCDC87Q9NVE4 MIR4662A-201ENST00000637499 67 ntBASIC1.19□□□□□ -2.22
CCDC87Q9NVE4 snoU13.17-201ENST00000458802 104 ntBASIC1.18□□□□□ -2.22
CCDC87Q9NVE4 RNU6-807P-201ENST00000516805 107 ntBASIC1.18□□□□□ -2.22
CCDC87Q9NVE4 MIR4698-201ENST00000577795 80 ntBASIC1.18□□□□□ -2.22
CCDC87Q9NVE4 MIR4714-201ENST00000580728 77 ntBASIC1.18□□□□□ -2.22
CCDC87Q9NVE4 SNORA24B-201ENST00000384176 131 ntBASIC1.17□□□□□ -2.22
CCDC87Q9NVE4 MIR519E-201ENST00000385075 84 ntBASIC1.17□□□□□ -2.22
CCDC87Q9NVE4 MIR1273G-201ENST00000577677 100 ntBASIC1.17□□□□□ -2.22
CCDC87Q9NVE4 RNU6-681P-201ENST00000364012 104 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 MIR608-201ENST00000384820 100 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 RNA5SP222-201ENST00000411039 105 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 RNU6-719P-201ENST00000516671 104 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 RNU6-303P-201ENST00000517091 106 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 AL590095.2-201ENST00000604136 117 ntBASIC1.16□□□□□ -2.22
CCDC87Q9NVE4 Y_RNA.12-201ENST00000362393 112 ntBASIC1.15□□□□□ -2.23
CCDC87Q9NVE4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CCDC87Q9NVE4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.14□□□□□ -2.23
CCDC87Q9NVE4 RNA5SP227-201ENST00000516184 113 ntBASIC1.14□□□□□ -2.23
CCDC87Q9NVE4 RNA5SP94-201ENST00000516917 108 ntBASIC1.14□□□□□ -2.23
CCDC87Q9NVE4 RNA5SP457-201ENST00000363657 124 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 RNU6-716P-201ENST00000365621 103 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 SNORA8.2-201ENST00000384372 139 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 U7.4-201ENST00000614961 63 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 MIR6513-201ENST00000621188 64 ntBASIC1.13□□□□□ -2.23
CCDC87Q9NVE4 RNA5SP268-201ENST00000516828 124 ntBASIC1.12□□□□□ -2.23
CCDC87Q9NVE4 AC145423.2-201ENST00000610631 239 ntBASIC1.12□□□□□ -2.23
CCDC87Q9NVE4 MIR548O2-201ENST00000616090 70 ntBASIC1.11□□□□□ -2.23
CCDC87Q9NVE4 RNU6-340P-201ENST00000364005 107 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 RNU6-110P-201ENST00000384508 104 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 AC074348.1-201ENST00000426503 132 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 AC093423.1-201ENST00000440817 142 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 U6.81-201ENST00000612550 106 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 AL162376.1-201ENST00000624117 175 ntBASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC87Q9NVE4 SNORA36.1-201ENST00000363424 132 ntBASIC1.09□□□□□ -2.23
CCDC87Q9NVE4 ACA64.5-201ENST00000516207 127 ntBASIC1.09□□□□□ -2.23
CCDC87Q9NVE4 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
CCDC87Q9NVE4 AC073869.9-201ENST00000641610 120 ntBASIC1.09□□□□□ -2.23
CCDC87Q9NVE4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
CCDC87Q9NVE4 RNU6-776P-201ENST00000364403 104 ntBASIC1.08□□□□□ -2.24
CCDC87Q9NVE4 RNU6-1022P-201ENST00000365049 104 ntBASIC1.08□□□□□ -2.24
CCDC87Q9NVE4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.08□□□□□ -2.24
CCDC87Q9NVE4 RNU6-269P-201ENST00000391077 97 ntBASIC1.08□□□□□ -2.24
CCDC87Q9NVE4 Y_RNA.178-201ENST00000363832 102 ntBASIC1.07□□□□□ -2.24
CCDC87Q9NVE4 RNU6-1296P-201ENST00000383879 107 ntBASIC1.07□□□□□ -2.24
CCDC87Q9NVE4 SNORA36.2-201ENST00000384004 127 ntBASIC1.07□□□□□ -2.24
CCDC87Q9NVE4 MIR140-201ENST00000385282 100 ntBASIC1.07□□□□□ -2.24
CCDC87Q9NVE4 Y_RNA.115-201ENST00000363272 98 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 SNORD114-23-201ENST00000363536 72 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 RNU1-141P-201ENST00000364623 158 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 MT-TY-201ENST00000387409 66 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 MIR936-201ENST00000401264 98 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 RNU7-24P-201ENST00000458867 62 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 MIR4460-201ENST00000577862 86 ntBASIC1.06□□□□□ -2.24
CCDC87Q9NVE4 RNU6-824P-201ENST00000363724 104 ntBASIC1.05□□□□□ -2.24
CCDC87Q9NVE4 AC010487.4-201ENST00000637027 61 ntBASIC1.05□□□□□ -2.24
CCDC87Q9NVE4 RNU6-752P-201ENST00000516376 102 ntBASIC1.04□□□□□ -2.24
CCDC87Q9NVE4 MIR924-201ENST00000638017 53 ntBASIC1.04□□□□□ -2.24
CCDC87Q9NVE4 Y_RNA.532-201ENST00000384590 113 ntBASIC1.03□□□□□ -2.24
CCDC87Q9NVE4 SNORD75.2-201ENST00000408784 58 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 307.3 ms