Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-75P-201ENST00000515944 104 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 SNORA40.13-201ENST00000516379 120 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 MTRNR2L2-201ENST00000604882 87 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 AL109933.3-201ENST00000619095 188 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 MIR499B-201ENST00000636498 73 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 MIRLET7F1-201ENST00000362202 87 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 RNA5SP457-201ENST00000363657 124 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 RNU6-147P-201ENST00000383983 107 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 SNORD4B-201ENST00000459083 72 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 MIR4315-1-201ENST00000636800 73 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 MIR4315-2-201ENST00000640925 73 ntBASIC0.24□□□□□ -2.37
PAAF1Q9BRP4 MIR216B-201ENST00000390186 82 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 RNU6-158P-201ENST00000517104 100 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 RNU1-29P-201ENST00000606574 126 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 AP001318.4-201ENST00000616637 121 ntBASIC0.23□□□□□ -2.37
PAAF1Q9BRP4 Y_RNA.495-201ENST00000384435 112 ntBASIC0.22□□□□□ -2.37
PAAF1Q9BRP4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.22□□□□□ -2.37
PAAF1Q9BRP4 MIR451A-201ENST00000385059 72 ntBASIC0.21□□□□□ -2.38
PAAF1Q9BRP4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.609-201ENST00000410669 89 ntBASIC0.21□□□□□ -2.38
PAAF1Q9BRP4 RNU4-32P-201ENST00000363404 141 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 RNU6-652P-201ENST00000365488 107 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 RNU6-811P-201ENST00000384069 107 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 MIR643-201ENST00000385267 97 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 YWHAEP2-201ENST00000580066 112 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 MIR4473-201ENST00000583731 91 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 AC069503.3-201ENST00000618674 145 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.2□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.190-201ENST00000363964 101 ntBASIC0.19□□□□□ -2.38
PAAF1Q9BRP4 AC026421.1-201ENST00000519101 163 ntBASIC0.19□□□□□ -2.38
PAAF1Q9BRP4 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
PAAF1Q9BRP4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.19□□□□□ -2.38
PAAF1Q9BRP4 RNU6-132P-201ENST00000383863 107 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 MIR501-201ENST00000390204 84 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 RNU6-127P-201ENST00000390897 107 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 AC093423.1-201ENST00000440817 142 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 FGF7P7-201ENST00000514120 227 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.677-201ENST00000516401 85 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 SNORA62.5-201ENST00000516634 120 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 AC104996.3-201ENST00000590718 94 ntBASIC0.18□□□□□ -2.38
PAAF1Q9BRP4 MIR610-201ENST00000385139 96 ntBASIC0.17□□□□□ -2.38
PAAF1Q9BRP4 MT-TY-201ENST00000387409 66 ntBASIC0.17□□□□□ -2.38
PAAF1Q9BRP4 RNU5B-6P-201ENST00000516765 68 ntBASIC0.17□□□□□ -2.38
PAAF1Q9BRP4 MIR3064-201ENST00000581130 66 ntBASIC0.17□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.290-201ENST00000364879 114 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 Y_RNA.491-201ENST00000384417 107 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 RNU6-1052P-201ENST00000411398 104 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 RNU6-719P-201ENST00000516671 104 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 MIR4677-201ENST00000584153 80 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 uc_338.10-201ENST00000621872 182 ntBASIC0.16□□□□□ -2.38
PAAF1Q9BRP4 RNA5SP63-201ENST00000391225 112 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 U3.27-201ENST00000391237 200 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 HMGN2P22-201ENST00000427588 175 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 SNORA25.13-201ENST00000516395 103 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 MIR548AD-201ENST00000584780 82 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 AC084368.1-201ENST00000620935 65 ntBASIC0.15□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.348-201ENST00000365403 103 ntBASIC0.14□□□□□ -2.39
PAAF1Q9BRP4 MIR516B1-201ENST00000385211 90 ntBASIC0.14□□□□□ -2.39
PAAF1Q9BRP4 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
PAAF1Q9BRP4 AC104408.1-201ENST00000605241 170 ntBASIC0.14□□□□□ -2.39
PAAF1Q9BRP4 RNA5SP214-201ENST00000363378 118 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 RNY4P3-201ENST00000365254 95 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 RNU6V-201ENST00000384105 107 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 RNU6-168P-201ENST00000516189 101 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 RNU6-782P-201ENST00000516852 104 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 MALAT1.1-201ENST00000618249 95 ntBASIC0.13□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.12□□□□□ -2.39
PAAF1Q9BRP4 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
PAAF1Q9BRP4 MIR892B-201ENST00000401279 77 ntBASIC0.12□□□□□ -2.39
PAAF1Q9BRP4 MTATP6P29-201ENST00000415057 132 ntBASIC0.12□□□□□ -2.39
PAAF1Q9BRP4 SNORA18.5-201ENST00000516616 101 ntBASIC0.12□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.81-201ENST00000362997 102 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 RNA5SP257-201ENST00000363023 116 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 RNA5SP292-201ENST00000390974 118 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 MIR1236-201ENST00000408340 102 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.660-201ENST00000516002 120 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 MIR548O2-201ENST00000616090 70 ntBASIC0.11□□□□□ -2.39
PAAF1Q9BRP4 SNORA42.1-201ENST00000363515 137 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 Y_RNA.220-201ENST00000364244 109 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 RNU6-153P-201ENST00000364422 104 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 MIR593-201ENST00000384856 100 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 SNORA75.1-201ENST00000391130 148 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.1□□□□□ -2.39
PAAF1Q9BRP4 SNORA63.2-201ENST00000362603 126 ntBASIC0.09□□□□□ -2.4
PAAF1Q9BRP4 RNU6-905P-201ENST00000384434 107 ntBASIC0.09□□□□□ -2.4
PAAF1Q9BRP4 RNA5SP89-201ENST00000410300 108 ntBASIC0.09□□□□□ -2.4
PAAF1Q9BRP4 RNU6-1051P-201ENST00000365471 102 ntBASIC0.08□□□□□ -2.4
PAAF1Q9BRP4 MIR5190-201ENST00000581537 80 ntBASIC0.08□□□□□ -2.4
PAAF1Q9BRP4 MIR3925-201ENST00000584674 77 ntBASIC0.08□□□□□ -2.4
PAAF1Q9BRP4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.07□□□□□ -2.4
PAAF1Q9BRP4 SNORD114-5-201ENST00000362928 70 ntBASIC0.07□□□□□ -2.4
PAAF1Q9BRP4 RNU6-640P-201ENST00000363693 105 ntBASIC0.07□□□□□ -2.4
PAAF1Q9BRP4 SNORD114-9-201ENST00000364370 72 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 305.4 ms