Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL39P28-201ENST00000465655 155 ntBASIC1.02□□□□□ -2.25
LIG3P49916 MIRLET7A1-201ENST00000362295 80 ntBASIC1.01□□□□□ -2.25
LIG3P49916 SNORA36.1-201ENST00000363424 132 ntBASIC1.01□□□□□ -2.25
LIG3P49916 SNORD114-22-201ENST00000365423 72 ntBASIC1.01□□□□□ -2.25
LIG3P49916 MIR140-201ENST00000385282 100 ntBASIC1.01□□□□□ -2.25
LIG3P49916 snoU13.17-201ENST00000458802 104 ntBASIC1.01□□□□□ -2.25
LIG3P49916 RNA5SP220-201ENST00000516298 104 ntBASIC1.01□□□□□ -2.25
LIG3P49916 RNU4-38P-201ENST00000364472 129 ntBASIC1□□□□□ -2.25
LIG3P49916 IST1-227ENST00000626438 126 ntTSL 5 BASIC1□□□□□ -2.25
LIG3P49916 RNU1-93P-201ENST00000364704 169 ntBASIC0.99□□□□□ -2.25
LIG3P49916 RNY1P8-201ENST00000383970 114 ntBASIC0.99□□□□□ -2.25
LIG3P49916 RNU6-42P-201ENST00000384165 107 ntBASIC0.99□□□□□ -2.25
LIG3P49916 SNORA24B-201ENST00000384176 131 ntBASIC0.99□□□□□ -2.25
LIG3P49916 RNU6-110P-201ENST00000384508 104 ntBASIC0.99□□□□□ -2.25
LIG3P49916 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
LIG3P49916 AC211469.2-201ENST00000605461 205 ntBASIC0.99□□□□□ -2.25
LIG3P49916 MIR6734-201ENST00000621166 68 ntBASIC0.99□□□□□ -2.25
LIG3P49916 MIR6767-201ENST00000637302 66 ntBASIC0.99□□□□□ -2.25
LIG3P49916 AC097510.1-201ENST00000510945 133 ntBASIC0.98□□□□□ -2.25
LIG3P49916 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LIG3P49916 Y_RNA.12-201ENST00000362393 112 ntBASIC0.97□□□□□ -2.25
LIG3P49916 SNORA8.2-201ENST00000384372 139 ntBASIC0.97□□□□□ -2.25
LIG3P49916 RNU6-1177P-201ENST00000391058 104 ntBASIC0.97□□□□□ -2.25
LIG3P49916 RNU6-269P-201ENST00000391077 97 ntBASIC0.97□□□□□ -2.25
LIG3P49916 RNU2-59P-201ENST00000410482 191 ntBASIC0.97□□□□□ -2.25
LIG3P49916 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.97□□□□□ -2.25
LIG3P49916 YWHAEP2-201ENST00000580066 112 ntBASIC0.97□□□□□ -2.25
LIG3P49916 YWHAEP3-201ENST00000582767 121 ntBASIC0.97□□□□□ -2.25
LIG3P49916 AL162376.1-201ENST00000624117 175 ntBASIC0.97□□□□□ -2.25
LIG3P49916 PSMC1P5-201ENST00000512850 177 ntBASIC0.96□□□□□ -2.26
LIG3P49916 MIR7107-201ENST00000611489 80 ntBASIC0.96□□□□□ -2.26
LIG3P49916 AC092634.7-201ENST00000621022 103 ntBASIC0.96□□□□□ -2.26
LIG3P49916 Y_RNA.244-201ENST00000364484 109 ntBASIC0.95□□□□□ -2.26
LIG3P49916 MIR489-201ENST00000384923 84 ntBASIC0.95□□□□□ -2.26
LIG3P49916 AC093423.1-201ENST00000440817 142 ntBASIC0.95□□□□□ -2.26
LIG3P49916 RNU6-807P-201ENST00000516805 107 ntBASIC0.95□□□□□ -2.26
LIG3P49916 MIR548O2-201ENST00000616090 70 ntBASIC0.95□□□□□ -2.26
LIG3P49916 RNU1-141P-201ENST00000364623 158 ntBASIC0.94□□□□□ -2.26
LIG3P49916 RNA5SP517-201ENST00000364724 117 ntBASIC0.94□□□□□ -2.26
LIG3P49916 Y_RNA.371-201ENST00000365591 113 ntBASIC0.94□□□□□ -2.26
LIG3P49916 MIR520E-201ENST00000384867 87 ntBASIC0.94□□□□□ -2.26
LIG3P49916 MIR146A-201ENST00000385201 99 ntBASIC0.94□□□□□ -2.26
LIG3P49916 RNU6-303P-201ENST00000517091 106 ntBASIC0.94□□□□□ -2.26
LIG3P49916 MIR4460-201ENST00000577862 86 ntBASIC0.94□□□□□ -2.26
LIG3P49916 MIR1297-201ENST00000637311 77 ntBASIC0.94□□□□□ -2.26
LIG3P49916 AC073869.9-201ENST00000641610 120 ntBASIC0.94□□□□□ -2.26
LIG3P49916 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
LIG3P49916 RNU6-681P-201ENST00000364012 104 ntBASIC0.93□□□□□ -2.26
LIG3P49916 MIR532-201ENST00000385025 91 ntBASIC0.93□□□□□ -2.26
LIG3P49916 RNU6-340P-201ENST00000364005 107 ntBASIC0.92□□□□□ -2.26
LIG3P49916 MT-TY-201ENST00000387409 66 ntBASIC0.92□□□□□ -2.26
LIG3P49916 Y_RNA.606-201ENST00000410579 103 ntBASIC0.92□□□□□ -2.26
LIG3P49916 RNA5SP484-201ENST00000458857 111 ntBASIC0.92□□□□□ -2.26
LIG3P49916 MIR3973-201ENST00000579824 107 ntBASIC0.92□□□□□ -2.26
LIG3P49916 U6.81-201ENST00000612550 106 ntBASIC0.92□□□□□ -2.26
LIG3P49916 MIR373-201ENST00000362273 69 ntBASIC0.91□□□□□ -2.26
LIG3P49916 RNU6-824P-201ENST00000363724 104 ntBASIC0.91□□□□□ -2.26
LIG3P49916 AL590095.2-201ENST00000604136 117 ntBASIC0.91□□□□□ -2.26
LIG3P49916 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
LIG3P49916 SNORD71-201ENST00000411292 86 ntBASIC0.9□□□□□ -2.27
LIG3P49916 RPS29P1-201ENST00000465274 159 ntBASIC0.9□□□□□ -2.27
LIG3P49916 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
LIG3P49916 RNU6V-201ENST00000384105 107 ntBASIC0.89□□□□□ -2.27
LIG3P49916 SNORA40.8-201ENST00000411034 126 ntBASIC0.89□□□□□ -2.27
LIG3P49916 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.89□□□□□ -2.27
LIG3P49916 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
LIG3P49916 MIR151B-201ENST00000584249 96 ntBASIC0.89□□□□□ -2.27
LIG3P49916 SNORA25.18-201ENST00000607153 114 ntBASIC0.89□□□□□ -2.27
LIG3P49916 RNU6-274P-201ENST00000459566 107 ntBASIC0.88□□□□□ -2.27
LIG3P49916 RNU6-1223P-201ENST00000517124 104 ntBASIC0.88□□□□□ -2.27
LIG3P49916 NAMPTP3-201ENST00000569273 224 ntBASIC0.88□□□□□ -2.27
LIG3P49916 AC069503.3-201ENST00000618674 145 ntBASIC0.88□□□□□ -2.27
LIG3P49916 MIR6788-201ENST00000618842 66 ntBASIC0.88□□□□□ -2.27
LIG3P49916 MIR4773-1-201ENST00000637203 78 ntBASIC0.88□□□□□ -2.27
LIG3P49916 MIR4662A-201ENST00000637499 67 ntBASIC0.88□□□□□ -2.27
LIG3P49916 Y_RNA.532-201ENST00000384590 113 ntBASIC0.87□□□□□ -2.27
LIG3P49916 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.87□□□□□ -2.27
LIG3P49916 SNORD75.2-201ENST00000408784 58 ntBASIC0.87□□□□□ -2.27
LIG3P49916 AC006210.1-201ENST00000424882 111 ntBASIC0.87□□□□□ -2.27
LIG3P49916 AC074348.1-201ENST00000426503 132 ntBASIC0.87□□□□□ -2.27
LIG3P49916 MIR4484-201ENST00000582855 83 ntBASIC0.87□□□□□ -2.27
LIG3P49916 AC145423.2-201ENST00000610631 239 ntBASIC0.87□□□□□ -2.27
LIG3P49916 U7.4-201ENST00000614961 63 ntBASIC0.87□□□□□ -2.27
LIG3P49916 SNORD118-201ENST00000363593 134 ntBASIC0.86□□□□□ -2.27
LIG3P49916 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
LIG3P49916 Y_RNA.258-201ENST00000364613 105 ntBASIC0.86□□□□□ -2.27
LIG3P49916 RNU6-54P-201ENST00000365563 107 ntBASIC0.86□□□□□ -2.27
LIG3P49916 RNU7-24P-201ENST00000458867 62 ntBASIC0.86□□□□□ -2.27
LIG3P49916 RNU6-495P-201ENST00000362995 107 ntBASIC0.85□□□□□ -2.27
LIG3P49916 RNU6-382P-201ENST00000365181 106 ntBASIC0.85□□□□□ -2.27
LIG3P49916 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.85□□□□□ -2.27
LIG3P49916 SNORD110-201ENST00000408189 75 ntBASIC0.84□□□□□ -2.27
LIG3P49916 MIR4653-201ENST00000585107 83 ntBASIC0.84□□□□□ -2.27
LIG3P49916 AC022709.1-201ENST00000615967 87 ntBASIC0.84□□□□□ -2.27
LIG3P49916 MIR6515-201ENST00000619843 57 ntBASIC0.84□□□□□ -2.27
LIG3P49916 Y_RNA.36-201ENST00000362602 112 ntBASIC0.83□□□□□ -2.28
LIG3P49916 RNU6-154P-201ENST00000384306 106 ntBASIC0.83□□□□□ -2.28
LIG3P49916 MIR518A1-201ENST00000385068 85 ntBASIC0.83□□□□□ -2.28
LIG3P49916 MIR889-201ENST00000401280 79 ntBASIC0.83□□□□□ -2.28
LIG3P49916 MIR548J-201ENST00000408833 112 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 192.4 ms