Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.217-201ENST00000364214 105 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-1051P-201ENST00000365471 102 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-373P-201ENST00000411247 98 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 AL691482.2-201ENST00000457453 84 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 Y_RNA.641-201ENST00000459414 105 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 MIR6863-201ENST00000636112 90 ntBASIC-3.09□□□□□ -2.9
CUX1P39880 RNU6-832P-201ENST00000363319 107 ntBASIC-3.1□□□□□ -2.91
CUX1P39880 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.1□□□□□ -2.91
CUX1P39880 SNORD50.2-201ENST00000365465 70 ntBASIC-3.1□□□□□ -2.91
CUX1P39880 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-3.1□□□□□ -2.91
CUX1P39880 SNORA26.8-201ENST00000391306 124 ntBASIC-3.1□□□□□ -2.91
CUX1P39880 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-3.1□□□□□ -2.91
CUX1P39880 RNU6-1129P-201ENST00000515964 104 ntBASIC-3.1□□□□□ -2.91
CUX1P39880 RNU6-211P-201ENST00000384047 107 ntBASIC-3.11□□□□□ -2.91
CUX1P39880 MTND4LP30-201ENST00000454092 297 ntBASIC-3.11□□□□□ -2.91
CUX1P39880 RNU6-62P-201ENST00000516526 102 ntBASIC-3.11□□□□□ -2.91
CUX1P39880 AC124864.2-201ENST00000624736 186 ntBASIC-3.11□□□□□ -2.91
CUX1P39880 SNORD18C-201ENST00000362704 69 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 SNORD113-8-201ENST00000363497 74 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 Y_RNA.144-201ENST00000363521 113 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 RNU6-598P-201ENST00000364017 105 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 Y_RNA.699-201ENST00000516803 93 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 AL365265.1-201ENST00000621045 234 ntBASIC-3.12□□□□□ -2.91
CUX1P39880 RNU6-1314P-201ENST00000517139 104 ntBASIC-3.13□□□□□ -2.91
CUX1P39880 RPS29P30-201ENST00000600975 111 ntBASIC-3.13□□□□□ -2.91
CUX1P39880 AC092794.1-201ENST00000612734 582 ntBASIC-3.13□□□□□ -2.91
CUX1P39880 RNU4-90P-201ENST00000362773 141 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 RNY3P3-201ENST00000363816 102 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 MIR581-201ENST00000384895 96 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 MIR509-1-201ENST00000385265 94 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 MIR509-2-201ENST00000390724 91 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 MIR548U-201ENST00000390728 81 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 RNU6-1111P-201ENST00000391118 107 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-3.14□□□□□ -2.91
CUX1P39880 RN7SKP298-201ENST00000515950 94 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 RNU6-1089P-201ENST00000516473 104 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-3.14□□□□□ -2.91
CUX1P39880 RNU6-1313P-201ENST00000362622 102 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 Y_RNA.339-201ENST00000365325 102 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 Y_RNA.639-201ENST00000458981 102 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 AC021753.1-201ENST00000635724 168 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 AC024614.3-201ENST00000637860 256 ntBASIC-3.14□□□□□ -2.91
CUX1P39880 SNORA7.5-201ENST00000410672 110 ntBASIC-3.15□□□□□ -2.91
CUX1P39880 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-3.15□□□□□ -2.91
CUX1P39880 AL050303.3-201ENST00000613704 284 ntBASIC-3.15□□□□□ -2.91
CUX1P39880 AC107308.1-201ENST00000615897 301 ntBASIC-3.15□□□□□ -2.91
CUX1P39880 U6.106-201ENST00000636360 105 ntBASIC-3.15□□□□□ -2.91
CUX1P39880 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.16□□□□□ -2.92
CUX1P39880 RNU6-828P-201ENST00000364876 107 ntBASIC-3.16□□□□□ -2.92
CUX1P39880 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.16□□□□□ -2.92
CUX1P39880 AL121914.1-201ENST00000450188 156 ntBASIC-3.16□□□□□ -2.92
CUX1P39880 RNU6-1271P-201ENST00000517049 105 ntBASIC-3.16□□□□□ -2.92
CUX1P39880 Y_RNA.64-201ENST00000362845 102 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 RNU6-451P-201ENST00000362921 107 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 RNY4P10-201ENST00000365571 96 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 RNU6-995P-201ENST00000391244 107 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 MTATP6P29-201ENST00000415057 132 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-3.17□□□□□ -2.92
CUX1P39880 MIR3646-201ENST00000578301 84 ntBASIC-3.17□□□□□ -2.92
CUX1P39880 RNU7-85P-201ENST00000458851 63 ntBASIC-3.18□□□□□ -2.92
CUX1P39880 U2.18-201ENST00000622185 84 ntBASIC-3.18□□□□□ -2.92
CUX1P39880 MIR4773-1-201ENST00000637203 78 ntBASIC-3.18□□□□□ -2.92
CUX1P39880 Y_RNA.109-201ENST00000363215 102 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 RNU6-1148P-201ENST00000410992 104 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 AC099799.1-201ENST00000439809 192 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 RNA5SP106-201ENST00000517274 100 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 DLEU2_1.2-201ENST00000614667 120 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 MIR1255B1-201ENST00000636325 63 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 RNU6-326P-201ENST00000365480 107 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 RNU6-987P-201ENST00000384759 104 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 RNY3P8-201ENST00000411366 126 ntBASIC-3.19□□□□□ -2.92
CUX1P39880 Y_RNA.602-201ENST00000410535 92 ntBASIC-3.2□□□□□ -2.92
CUX1P39880 AL731768.1-201ENST00000603124 139 ntBASIC-3.2□□□□□ -2.92
CUX1P39880 U2.7-201ENST00000619197 100 ntBASIC-3.2□□□□□ -2.92
CUX1P39880 RNU6-247P-201ENST00000362636 107 ntBASIC-3.21□□□□□ -2.92
CUX1P39880 Y_RNA.398-201ENST00000383952 99 ntBASIC-3.21□□□□□ -2.92
CUX1P39880 MIR548F5-201ENST00000408421 86 ntBASIC-3.21□□□□□ -2.92
CUX1P39880 AL442128.1-201ENST00000615151 90 ntBASIC-3.21□□□□□ -2.92
CUX1P39880 RNU6-363P-201ENST00000362895 105 ntBASIC-3.22□□□□□ -2.92
CUX1P39880 SNORA27.2-201ENST00000363365 126 ntBASIC-3.22□□□□□ -2.92
CUX1P39880 MIR3064-201ENST00000581130 66 ntBASIC-3.22□□□□□ -2.92
CUX1P39880 Y_RNA.74-201ENST00000362911 99 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 RNU6-1215P-201ENST00000384441 102 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 RNU6-971P-201ENST00000516920 106 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 AL137067.1-201ENST00000615933 120 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 AC025521.1-201ENST00000621624 286 ntBASIC-3.23□□□□□ -2.93
CUX1P39880 Y_RNA.31-201ENST00000362574 102 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 Y_RNA.282-201ENST00000364793 102 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 RNY4P20-201ENST00000516678 93 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 MIR4744-201ENST00000581563 82 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 AC093424.1-201ENST00000604999 338 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 Y_RNA.88-201ENST00000363029 99 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 AL118496.2-201ENST00000448300 230 ntBASIC-3.24□□□□□ -2.93
CUX1P39880 RNU6-912P-201ENST00000363800 104 ntBASIC-3.25□□□□□ -2.93
CUX1P39880 SNORD115-46-201ENST00000390982 71 ntBASIC-3.25□□□□□ -2.93
CUX1P39880 RNU6-510P-201ENST00000391239 108 ntBASIC-3.25□□□□□ -2.93
CUX1P39880 RNU6-381P-201ENST00000391259 108 ntBASIC-3.25□□□□□ -2.93
Retrieved 100 of 98,524 protein–RNA pairs in 221.6 ms