Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU7-85P-201ENST00000458851 63 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 RNU6-426P-201ENST00000516464 97 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 RNU6-881P-201ENST00000516813 102 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 SNORA40.17-201ENST00000517256 115 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 MTND5P41-201ENST00000517498 206 ntBASIC-0.66□□□□□ -2.52
SHMT2P34897 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 RNU6-905P-201ENST00000384434 107 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 RNU6-592P-201ENST00000411333 103 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 SNORD22.1-201ENST00000516331 125 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 RNU6-719P-201ENST00000516671 104 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 MIR3613-201ENST00000579844 87 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 MIR4636-201ENST00000582271 80 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 AL353621.2-201ENST00000605340 133 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.67□□□□□ -2.52
SHMT2P34897 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 SNORD115-23-201ENST00000364461 82 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 RNU6-132P-201ENST00000383863 107 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR224-201ENST00000384889 81 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR577-201ENST00000385196 96 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR3179-1-201ENST00000578940 84 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR3179-2-201ENST00000579107 84 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR3179-3-201ENST00000579566 84 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 AC096720.1-201ENST00000604441 183 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR6773-201ENST00000612812 74 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 MIR3179-4-201ENST00000617599 84 ntBASIC-0.68□□□□□ -2.52
SHMT2P34897 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 SNORD50.2-201ENST00000365465 70 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 SNORA24B-201ENST00000384176 131 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 MIR518B-201ENST00000385127 83 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 RNU6-182P-201ENST00000516970 105 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 MIR4694-201ENST00000578534 80 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.69□□□□□ -2.52
SHMT2P34897 MIR3140-201ENST00000583685 90 ntBASIC-0.69□□□□□ -2.52
SHMT2P34897 RNU6-886P-201ENST00000384319 105 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 MIR604-201ENST00000384880 94 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 MIRLET7B-201ENST00000385140 83 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 U3.27-201ENST00000391237 200 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 AC021146.6-201ENST00000514659 117 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 RNU6-772P-201ENST00000516042 105 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 MIR4493-201ENST00000584016 73 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 MIR6854-201ENST00000614935 69 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 AL035470.1-201ENST00000622571 220 ntBASIC-0.7□□□□□ -2.52
SHMT2P34897 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 RNU4-36P-201ENST00000364294 144 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 RNU6-990P-201ENST00000364385 104 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 MTND4LP9-201ENST00000427694 174 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 AL500527.2-201ENST00000454105 95 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 SNORA13-201ENST00000458790 133 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 AC090617.8-201ENST00000623339 167 ntBASIC-0.71□□□□□ -2.52
SHMT2P34897 RNU6-495P-201ENST00000362995 107 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 MIR517B-201ENST00000385102 67 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 SNORD90-201ENST00000391145 111 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 Z95118.1-201ENST00000421372 247 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.72□□□□□ -2.52
SHMT2P34897 FGF7P7-201ENST00000514120 227 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 AL513043.2-201ENST00000573941 143 ntBASIC-0.72□□□□□ -2.52
SHMT2P34897 RNU6-832P-201ENST00000363319 107 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 SNORD114-25-201ENST00000363742 72 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 AP000533.3-201ENST00000447704 118 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 SNORD2-201ENST00000459163 69 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 RNU6-758P-201ENST00000516292 89 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 MIR4679-2-201ENST00000578358 77 ntBASIC-0.73□□□□□ -2.53
SHMT2P34897 RNU6-431P-201ENST00000383874 107 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 MIR196A1-201ENST00000388006 70 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 RNU4-63P-201ENST00000411313 118 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 AC022137.1-201ENST00000483735 151 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 MIR4464-201ENST00000580818 92 ntBASIC-0.74□□□□□ -2.53
SHMT2P34897 RNY3P2-201ENST00000362918 102 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 SNORD114-4-201ENST00000363962 75 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 RNU6-65P-201ENST00000516332 98 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 MIR3064-201ENST00000581130 66 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 MIR4536-1-201ENST00000583537 88 ntBASIC-0.75□□□□□ -2.53
SHMT2P34897 AL157777.2-201ENST00000258070 137 ntBASIC-0.76□□□□□ -2.53
SHMT2P34897 SNORA63.2-201ENST00000362603 126 ntBASIC-0.76□□□□□ -2.53
SHMT2P34897 SNORD74.6-201ENST00000364796 70 ntBASIC-0.76□□□□□ -2.53
SHMT2P34897 SNORA63.6-201ENST00000364921 119 ntBASIC-0.76□□□□□ -2.53
SHMT2P34897 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.76□□□□□ -2.53
SHMT2P34897 RNA5SP368-201ENST00000364298 116 ntBASIC-0.77□□□□□ -2.53
SHMT2P34897 RNU6-35P-201ENST00000384530 107 ntBASIC-0.77□□□□□ -2.53
SHMT2P34897 SNORD64-201ENST00000386683 67 ntBASIC-0.77□□□□□ -2.53
SHMT2P34897 SNORA40-201ENST00000388090 126 ntBASIC-0.77□□□□□ -2.53
SHMT2P34897 SNORD4B-201ENST00000459083 72 ntBASIC-0.77□□□□□ -2.53
SHMT2P34897 RNU7-200P-201ENST00000516105 62 ntBASIC-0.77□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 292.7 ms