Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 U7.3-201ENST00000616123 62 ntBASIC0.15□□□□□ -2.39
MSH3P20585 AP001318.4-201ENST00000616637 121 ntBASIC0.15□□□□□ -2.39
MSH3P20585 MIR2052-201ENST00000636055 55 ntBASIC0.15□□□□□ -2.39
MSH3P20585 RNU6-132P-201ENST00000383863 107 ntBASIC0.14□□□□□ -2.39
MSH3P20585 MT-TY-201ENST00000387409 66 ntBASIC0.14□□□□□ -2.39
MSH3P20585 RNU6-162P-201ENST00000516228 103 ntBASIC0.14□□□□□ -2.39
MSH3P20585 MIR4677-201ENST00000584153 80 ntBASIC0.14□□□□□ -2.39
MSH3P20585 MIR8087-201ENST00000612745 78 ntBASIC0.14□□□□□ -2.39
MSH3P20585 SNORA42.1-201ENST00000363515 137 ntBASIC0.13□□□□□ -2.39
MSH3P20585 MIR216B-201ENST00000390186 82 ntBASIC0.13□□□□□ -2.39
MSH3P20585 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
MSH3P20585 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
MSH3P20585 RNU6-782P-201ENST00000516852 104 ntBASIC0.13□□□□□ -2.39
MSH3P20585 MIR3064-201ENST00000581130 66 ntBASIC0.13□□□□□ -2.39
MSH3P20585 MIR4514-201ENST00000581410 57 ntBASIC0.13□□□□□ -2.39
MSH3P20585 RNA5SP214-201ENST00000363378 118 ntBASIC0.12□□□□□ -2.39
MSH3P20585 Y_RNA.190-201ENST00000363964 101 ntBASIC0.12□□□□□ -2.39
MSH3P20585 Y_RNA.290-201ENST00000364879 114 ntBASIC0.12□□□□□ -2.39
MSH3P20585 MIR7-2-201ENST00000384970 110 ntBASIC0.12□□□□□ -2.39
MSH3P20585 MIR548U-201ENST00000390728 81 ntBASIC0.12□□□□□ -2.39
MSH3P20585 SNORA25.13-201ENST00000516395 103 ntBASIC0.12□□□□□ -2.39
MSH3P20585 AC026421.1-201ENST00000519101 163 ntBASIC0.12□□□□□ -2.39
MSH3P20585 YWHAEP2-201ENST00000580066 112 ntBASIC0.12□□□□□ -2.39
MSH3P20585 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.12□□□□□ -2.39
MSH3P20585 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.11□□□□□ -2.39
MSH3P20585 Y_RNA.205-201ENST00000364128 113 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU6-32P-201ENST00000383948 107 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU6-13P-201ENST00000384248 107 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU6-12P-201ENST00000384604 107 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU6-41P-201ENST00000384741 107 ntBASIC0.11□□□□□ -2.39
MSH3P20585 MIR451A-201ENST00000385059 72 ntBASIC0.11□□□□□ -2.39
MSH3P20585 U3.27-201ENST00000391237 200 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.11□□□□□ -2.39
MSH3P20585 SNORA40.13-201ENST00000516379 120 ntBASIC0.11□□□□□ -2.39
MSH3P20585 Y_RNA.677-201ENST00000516401 85 ntBASIC0.11□□□□□ -2.39
MSH3P20585 MIR3925-201ENST00000584674 77 ntBASIC0.11□□□□□ -2.39
MSH3P20585 AC104996.3-201ENST00000590718 94 ntBASIC0.11□□□□□ -2.39
MSH3P20585 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.11□□□□□ -2.39
MSH3P20585 RNU6-161P-201ENST00000363051 106 ntBASIC0.1□□□□□ -2.39
MSH3P20585 SNORD114-9-201ENST00000364370 72 ntBASIC0.1□□□□□ -2.39
MSH3P20585 Y_RNA.348-201ENST00000365403 103 ntBASIC0.1□□□□□ -2.39
MSH3P20585 RNU6-652P-201ENST00000365488 107 ntBASIC0.1□□□□□ -2.39
MSH3P20585 RNU6-811P-201ENST00000384069 107 ntBASIC0.1□□□□□ -2.39
MSH3P20585 Y_RNA.495-201ENST00000384435 112 ntBASIC0.1□□□□□ -2.39
MSH3P20585 MIR643-201ENST00000385267 97 ntBASIC0.1□□□□□ -2.39
MSH3P20585 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
MSH3P20585 Y_RNA.609-201ENST00000410669 89 ntBASIC0.1□□□□□ -2.39
MSH3P20585 AC104408.1-201ENST00000605241 170 ntBASIC0.1□□□□□ -2.39
MSH3P20585 MIR548O2-201ENST00000616090 70 ntBASIC0.1□□□□□ -2.39
MSH3P20585 MIR6779-201ENST00000617283 64 ntBASIC0.1□□□□□ -2.39
MSH3P20585 RNU5B-6P-201ENST00000516765 68 ntBASIC0.09□□□□□ -2.4
MSH3P20585 Y_RNA.491-201ENST00000384417 107 ntBASIC0.08□□□□□ -2.4
MSH3P20585 MIR548H2-201ENST00000408874 88 ntBASIC0.08□□□□□ -2.4
MSH3P20585 MIR4473-201ENST00000583731 91 ntBASIC0.08□□□□□ -2.4
MSH3P20585 uc_338.10-201ENST00000621872 182 ntBASIC0.08□□□□□ -2.4
MSH3P20585 MIR610-201ENST00000385139 96 ntBASIC0.07□□□□□ -2.4
MSH3P20585 MIR516B1-201ENST00000385211 90 ntBASIC0.07□□□□□ -2.4
MSH3P20585 RNA5SP292-201ENST00000390974 118 ntBASIC0.07□□□□□ -2.4
MSH3P20585 RNA5SP63-201ENST00000391225 112 ntBASIC0.07□□□□□ -2.4
MSH3P20585 RNA5SP325-201ENST00000363756 130 ntBASIC0.06□□□□□ -2.4
MSH3P20585 FGF7P7-201ENST00000514120 227 ntBASIC0.06□□□□□ -2.4
MSH3P20585 SNORA18.5-201ENST00000516616 101 ntBASIC0.06□□□□□ -2.4
MSH3P20585 MIR548AE1-201ENST00000583292 70 ntBASIC0.06□□□□□ -2.4
MSH3P20585 MIR4743-201ENST00000584576 69 ntBASIC0.06□□□□□ -2.4
MSH3P20585 AC084368.1-201ENST00000620935 65 ntBASIC0.06□□□□□ -2.4
MSH3P20585 SNORA63.2-201ENST00000362603 126 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU4-32P-201ENST00000363404 141 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6-640P-201ENST00000363693 105 ntBASIC0.05□□□□□ -2.4
MSH3P20585 Y_RNA.407-201ENST00000383986 113 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6V-201ENST00000384105 107 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6-905P-201ENST00000384434 107 ntBASIC0.05□□□□□ -2.4
MSH3P20585 MIR876-201ENST00000401147 81 ntBASIC0.05□□□□□ -2.4
MSH3P20585 MIR892B-201ENST00000401279 77 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6-1052P-201ENST00000411398 104 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6-719P-201ENST00000516671 104 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNA5SP330-201ENST00000517096 96 ntBASIC0.05□□□□□ -2.4
MSH3P20585 SCARNA11.2-201ENST00000517183 154 ntBASIC0.05□□□□□ -2.4
MSH3P20585 MIR4768-201ENST00000585270 74 ntBASIC0.05□□□□□ -2.4
MSH3P20585 MALAT1.1-201ENST00000618249 95 ntBASIC0.05□□□□□ -2.4
MSH3P20585 RNU6-1051P-201ENST00000365471 102 ntBASIC0.04□□□□□ -2.4
MSH3P20585 MIR145-201ENST00000384967 88 ntBASIC0.04□□□□□ -2.4
MSH3P20585 SNORA75.1-201ENST00000391130 148 ntBASIC0.04□□□□□ -2.4
MSH3P20585 MIR3140-201ENST00000583685 90 ntBASIC0.04□□□□□ -2.4
MSH3P20585 MIR6718-201ENST00000616153 80 ntBASIC0.04□□□□□ -2.4
MSH3P20585 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.03□□□□□ -2.4
MSH3P20585 RNA5SP457-201ENST00000363657 124 ntBASIC0.03□□□□□ -2.4
MSH3P20585 RNU6-153P-201ENST00000364422 104 ntBASIC0.03□□□□□ -2.4
MSH3P20585 Y_RNA.437-201ENST00000384113 113 ntBASIC0.03□□□□□ -2.4
MSH3P20585 MIR593-201ENST00000384856 100 ntBASIC0.03□□□□□ -2.4
MSH3P20585 Y_RNA.115-201ENST00000363272 98 ntBASIC0.02□□□□□ -2.41
MSH3P20585 RNU6-168P-201ENST00000516189 101 ntBASIC0.02□□□□□ -2.41
MSH3P20585 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
MSH3P20585 SNORD114-5-201ENST00000362928 70 ntBASIC0.01□□□□□ -2.41
MSH3P20585 Y_RNA.81-201ENST00000362997 102 ntBASIC0.01□□□□□ -2.41
MSH3P20585 Y_RNA.258-201ENST00000364613 105 ntBASIC0.01□□□□□ -2.41
MSH3P20585 RNU6-54P-201ENST00000365563 107 ntBASIC0.01□□□□□ -2.41
MSH3P20585 MIR488-201ENST00000365739 83 ntBASIC0.01□□□□□ -2.41
MSH3P20585 SNORA24B-201ENST00000384176 131 ntBASIC0.01□□□□□ -2.41
MSH3P20585 RNU6-154P-201ENST00000384306 106 ntBASIC0.01□□□□□ -2.41
MSH3P20585 SNORD90-201ENST00000391145 111 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms