Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.24□□□□□ -2.45
MMP1P03956 RNU6-935P-201ENST00000410371 100 ntBASIC-0.24□□□□□ -2.45
MMP1P03956 AC244250.2-201ENST00000418731 148 ntBASIC-0.24□□□□□ -2.45
MMP1P03956 SNORD4A-201ENST00000459174 72 ntBASIC-0.24□□□□□ -2.45
MMP1P03956 MIR548Z-201ENST00000584743 97 ntBASIC-0.24□□□□□ -2.45
MMP1P03956 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 SNORA18.1-201ENST00000363418 128 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 MIR4645-201ENST00000583158 77 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 MIR4439-201ENST00000583746 80 ntBASIC-0.25□□□□□ -2.45
MMP1P03956 SNORD114-12-201ENST00000365400 75 ntBASIC-0.26□□□□□ -2.45
MMP1P03956 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.26□□□□□ -2.45
MMP1P03956 MIR652-201ENST00000385278 98 ntBASIC-0.26□□□□□ -2.45
MMP1P03956 MIR4777-201ENST00000583710 86 ntBASIC-0.26□□□□□ -2.45
MMP1P03956 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 SNORD45B-201ENST00000364617 72 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 RNA5SP205-201ENST00000364653 136 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 SNORD114-29-201ENST00000364819 70 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 SNORD49B-201ENST00000365172 72 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 MIR604-201ENST00000384880 94 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 MIR451A-201ENST00000385059 72 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 snoU13.19-201ENST00000459148 104 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.27□□□□□ -2.45
MMP1P03956 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 SNORD114-15-201ENST00000364687 72 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 RNY4P3-201ENST00000365254 95 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 RNU6-132P-201ENST00000383863 107 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 RNU6-811P-201ENST00000384069 107 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 RNU6-813P-201ENST00000384691 107 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 SNORA19.1-201ENST00000410656 129 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 AC103810.7-201ENST00000607821 91 ntBASIC-0.28□□□□□ -2.45
MMP1P03956 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.28□□□□□ -2.45
MMP1P03956 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-54P-201ENST00000365563 107 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 SNORD116-21-201ENST00000384507 92 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-880P-201ENST00000384526 107 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-959P-201ENST00000384671 107 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 MIR216B-201ENST00000390186 82 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-644P-201ENST00000391155 98 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-795P-201ENST00000516323 103 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-65P-201ENST00000516332 98 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 MIR4536-1-201ENST00000583537 88 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 AC012531.4-201ENST00000616509 177 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 AL627230.5-201ENST00000619807 58 ntBASIC-0.29□□□□□ -2.46
MMP1P03956 MIR101-1-201ENST00000362265 75 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 SNORA49-201ENST00000386157 136 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.3□□□□□ -2.46
MMP1P03956 MIR20A-201ENST00000362279 71 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 RNA5SP368-201ENST00000364298 116 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 SNORD4B-201ENST00000459083 72 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 RNU6-904P-201ENST00000516206 101 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 AC108676.2-201ENST00000605225 163 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 MIR3666-201ENST00000607845 111 ntBASIC-0.31□□□□□ -2.46
MMP1P03956 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 RNU4-36P-201ENST00000364294 144 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 RNU6-81P-201ENST00000365608 104 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 MIR582-201ENST00000365731 98 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 RNA5SP300-201ENST00000391197 107 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 U3.27-201ENST00000391237 200 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 AC244090.1-201ENST00000441884 93 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 SNORD42B-201ENST00000458893 67 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 MIR3064-201ENST00000581130 66 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 AC145423.2-201ENST00000610631 239 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 AL590491.3-201ENST00000610731 82 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 AL365222.1-201ENST00000614661 98 ntBASIC-0.32□□□□□ -2.46
MMP1P03956 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.33□□□□□ -2.46
MMP1P03956 RNU6-719P-201ENST00000516671 104 ntBASIC-0.33□□□□□ -2.46
MMP1P03956 RNU6-537P-201ENST00000517277 103 ntBASIC-0.33□□□□□ -2.46
MMP1P03956 SNORD114-28-201ENST00000363610 72 ntBASIC-0.34□□□□□ -2.46
MMP1P03956 SNORD95.1-201ENST00000364099 68 ntBASIC-0.34□□□□□ -2.46
MMP1P03956 RNU6-412P-201ENST00000516434 106 ntBASIC-0.34□□□□□ -2.46
MMP1P03956 RNU6-762P-201ENST00000517107 102 ntBASIC-0.34□□□□□ -2.46
MMP1P03956 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.34□□□□□ -2.46
MMP1P03956 MIR9-2-201ENST00000384838 87 ntBASIC-0.35□□□□□ -2.47
MMP1P03956 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.35□□□□□ -2.47
MMP1P03956 FGF7P7-201ENST00000514120 227 ntBASIC-0.35□□□□□ -2.47
MMP1P03956 SCARNA23-201ENST00000516060 130 ntBASIC-0.35□□□□□ -2.47
MMP1P03956 MIR3140-201ENST00000583685 90 ntBASIC-0.35□□□□□ -2.47
MMP1P03956 AC104996.3-201ENST00000590718 94 ntBASIC-0.35□□□□□ -2.47
MMP1P03956 SNORA24B-201ENST00000384176 131 ntBASIC-0.36□□□□□ -2.47
MMP1P03956 RNU6-455P-201ENST00000384681 107 ntBASIC-0.36□□□□□ -2.47
MMP1P03956 MIR548E-201ENST00000408287 88 ntBASIC-0.36□□□□□ -2.47
MMP1P03956 AC008267.6-201ENST00000441664 139 ntBASIC-0.36□□□□□ -2.47
MMP1P03956 AC097510.1-201ENST00000510945 133 ntBASIC-0.36□□□□□ -2.47
MMP1P03956 SNORA63.2-201ENST00000362603 126 ntBASIC-0.37□□□□□ -2.47
MMP1P03956 SNORD58A-201ENST00000383875 65 ntBASIC-0.37□□□□□ -2.47
MMP1P03956 RNU6-476P-201ENST00000384726 107 ntBASIC-0.37□□□□□ -2.47
MMP1P03956 MIR548U-201ENST00000390728 81 ntBASIC-0.37□□□□□ -2.47
MMP1P03956 RNA5SP292-201ENST00000390974 118 ntBASIC-0.37□□□□□ -2.47
MMP1P03956 SNORD90-201ENST00000391145 111 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms