Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC021146.6-201ENST00000514659 117 ntBASIC-0.68□□□□□ -2.52
CPSF4O95639 SCARNA17-201ENST00000516183 144 ntBASIC-0.68□□□□□ -2.52
CPSF4O95639 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.68□□□□□ -2.52
CPSF4O95639 U7.2-201ENST00000607576 63 ntBASIC-0.68□□□□□ -2.52
CPSF4O95639 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 RNU6-463P-201ENST00000384340 107 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 MIR4324-201ENST00000584846 72 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 AC025166.1-201ENST00000612411 163 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 AC025521.1-201ENST00000621624 286 ntBASIC-0.69□□□□□ -2.52
CPSF4O95639 MTND5P18-201ENST00000445624 1801 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 RNU6-379P-201ENST00000363813 104 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 SNORD114-4-201ENST00000363962 75 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 RNU6-973P-201ENST00000364690 107 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 SNORD83B-201ENST00000386745 93 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 SNORD42B-201ENST00000458893 67 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 AC004792.1-201ENST00000614523 137 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 MIR6738-201ENST00000619620 64 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.7□□□□□ -2.52
CPSF4O95639 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-502P-201ENST00000362419 108 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 SNORD58C-201ENST00000365223 64 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-804P-201ENST00000384286 107 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-476P-201ENST00000384726 107 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 MIR577-201ENST00000385196 96 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 MIR569-201ENST00000385228 96 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-65P-201ENST00000516332 98 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNU6-719P-201ENST00000516671 104 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 RNY1P9-201ENST00000532431 109 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 MIR4536-1-201ENST00000583537 88 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.71□□□□□ -2.52
CPSF4O95639 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 SNORA13-201ENST00000458790 133 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.72□□□□□ -2.52
CPSF4O95639 FGF7P7-201ENST00000514120 227 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 RNA5SP476-201ENST00000516613 103 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 RNU6-388P-201ENST00000517012 105 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 RNU6-389P-201ENST00000517048 105 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.72□□□□□ -2.52
CPSF4O95639 MIR5704-201ENST00000584029 77 ntBASIC-0.72□□□□□ -2.52
CPSF4O95639 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 SNORD50.2-201ENST00000365465 70 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 RNU6-10P-201ENST00000384036 107 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 MIR587-201ENST00000384845 96 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 HAR1A.1-201ENST00000459583 118 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 RNA5SP272-201ENST00000516095 111 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 MIR3144-201ENST00000579460 79 ntBASIC-0.73□□□□□ -2.53
CPSF4O95639 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.74□□□□□ -2.53
CPSF4O95639 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.74□□□□□ -2.53
CPSF4O95639 MIR518B-201ENST00000385127 83 ntBASIC-0.74□□□□□ -2.53
CPSF4O95639 RNU7-85P-201ENST00000458851 63 ntBASIC-0.74□□□□□ -2.53
CPSF4O95639 MIR4694-201ENST00000578534 80 ntBASIC-0.74□□□□□ -2.53
CPSF4O95639 RNU6-832P-201ENST00000363319 107 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 RNU6-721P-201ENST00000410155 105 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 RNU6-881P-201ENST00000516813 102 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 AL513043.2-201ENST00000573941 143 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 MIR3179-1-201ENST00000578940 84 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 MIR3179-2-201ENST00000579107 84 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 MIR3179-3-201ENST00000579566 84 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 MIR3179-4-201ENST00000617599 84 ntBASIC-0.75□□□□□ -2.53
CPSF4O95639 RNU4-32P-201ENST00000363404 141 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 RNU6-132P-201ENST00000383863 107 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 SNORD22.1-201ENST00000516331 125 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 MIR6854-201ENST00000614935 69 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 MIR8068-201ENST00000618032 68 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 AL035470.1-201ENST00000622571 220 ntBASIC-0.76□□□□□ -2.53
CPSF4O95639 RNY3P2-201ENST00000362918 102 ntBASIC-0.77□□□□□ -2.53
CPSF4O95639 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.77□□□□□ -2.53
CPSF4O95639 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.77□□□□□ -2.53
CPSF4O95639 MIR3613-201ENST00000579844 87 ntBASIC-0.77□□□□□ -2.53
CPSF4O95639 MIR3140-201ENST00000583685 90 ntBASIC-0.77□□□□□ -2.53
CPSF4O95639 MIR6773-201ENST00000612812 74 ntBASIC-0.77□□□□□ -2.53
CPSF4O95639 SNORA63.2-201ENST00000362603 126 ntBASIC-0.78□□□□□ -2.53
CPSF4O95639 RNU6-426P-201ENST00000516464 97 ntBASIC-0.78□□□□□ -2.53
CPSF4O95639 MTND5P41-201ENST00000517498 206 ntBASIC-0.78□□□□□ -2.53
CPSF4O95639 MIR4679-2-201ENST00000578358 77 ntBASIC-0.78□□□□□ -2.53
CPSF4O95639 MIR409-201ENST00000362237 79 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 RNU6-495P-201ENST00000362995 107 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 SNORA63.6-201ENST00000364921 119 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 MT-TG-201ENST00000387429 68 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 RNA5SP470-201ENST00000516463 106 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 snoR1.1-201ENST00000628177 80 ntBASIC-0.79□□□□□ -2.54
CPSF4O95639 RNU4-36P-201ENST00000364294 144 ntBASIC-0.8□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 217.1 ms