Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR1289-2-201ENST00000408360 111 ntBASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-800P-201ENST00000384473 103 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 RPS26P5-201ENST00000418544 335 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 AL591704.2-201ENST00000421658 181 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 AL591806.2-201ENST00000433122 173 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 snoU13.23-201ENST00000458863 104 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 RNU6-1265P-201ENST00000516342 103 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 MTRNR2L2-201ENST00000604882 87 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 AL157834.3-201ENST00000615543 103 ntBASIC1.72□□□□□ -2.13
HIF3AQ9Y2N7 SNORD45A-201ENST00000384512 84 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 RNU2-59P-201ENST00000410482 191 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-994P-201ENST00000410507 111 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 RNU7-102P-201ENST00000458948 62 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 MIR3675-201ENST00000583661 73 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 AC106800.4-201ENST00000614905 153 ntBASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
HIF3AQ9Y2N7 SNORD114-1-201ENST00000362705 72 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-681P-201ENST00000364012 104 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 SNORA24B-201ENST00000384176 131 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 MIR938-201ENST00000401216 83 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 AC097510.1-201ENST00000510945 133 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 AC015712.3-201ENST00000559380 164 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 AC008608.1-201ENST00000603910 127 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 AC027335.2-201ENST00000624030 375 ntBASIC1.7□□□□□ -2.14
HIF3AQ9Y2N7 Y_RNA.205-201ENST00000364128 113 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 SNORA80D-201ENST00000384488 135 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 RNU7-21P-201ENST00000459430 62 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-1057P-201ENST00000517162 102 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 AC012493.3-201ENST00000604494 112 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 U6.81-201ENST00000612550 106 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 MIR4773-1-201ENST00000637203 78 ntBASIC1.69□□□□□ -2.14
HIF3AQ9Y2N7 SNORD45.1-201ENST00000363181 77 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-895P-201ENST00000384125 103 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 Y_RNA.606-201ENST00000410579 103 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-287P-201ENST00000516230 98 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 MIR4285-201ENST00000581001 85 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HIF3AQ9Y2N7 SNORA16.1-201ENST00000364597 132 ntBASIC1.67□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-910P-201ENST00000390844 107 ntBASIC1.67□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-977P-201ENST00000516411 103 ntBASIC1.67□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-548P-201ENST00000517083 115 ntBASIC1.67□□□□□ -2.14
HIF3AQ9Y2N7 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HIF3AQ9Y2N7 RNA5SP99-201ENST00000364020 114 ntBASIC1.66□□□□□ -2.14
HIF3AQ9Y2N7 MIR100-201ENST00000385259 80 ntBASIC1.66□□□□□ -2.14
HIF3AQ9Y2N7 MIR764-201ENST00000390811 85 ntBASIC1.66□□□□□ -2.14
HIF3AQ9Y2N7 RNU7-90P-201ENST00000459216 62 ntBASIC1.66□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-881P-201ENST00000516813 102 ntBASIC1.66□□□□□ -2.14
HIF3AQ9Y2N7 RNU6-369P-201ENST00000362515 102 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 Y_RNA.258-201ENST00000364613 105 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-604P-201ENST00000390917 100 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-1177P-201ENST00000391058 104 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-482P-201ENST00000391068 107 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 SNORD79.1-201ENST00000516069 84 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 MIR4804-201ENST00000581683 73 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 AL353997.5-201ENST00000618886 171 ntBASIC1.65□□□□□ -2.15
HIF3AQ9Y2N7 Y_RNA.32-201ENST00000362589 110 ntBASIC1.64□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-382P-201ENST00000365181 106 ntBASIC1.64□□□□□ -2.15
HIF3AQ9Y2N7 RNU1-119P-201ENST00000391122 165 ntBASIC1.64□□□□□ -2.15
HIF3AQ9Y2N7 AC244505.6-201ENST00000452829 130 ntBASIC1.64□□□□□ -2.15
HIF3AQ9Y2N7 AC005520.4-201ENST00000604337 90 ntBASIC1.64□□□□□ -2.15
HIF3AQ9Y2N7 MIR520F-201ENST00000384824 87 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-630P-201ENST00000391258 106 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-274P-201ENST00000459566 107 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 SNORA31.14-201ENST00000516728 116 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 AL078603.1-201ENST00000603824 313 ntBASIC1.63□□□□□ -2.15
HIF3AQ9Y2N7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
HIF3AQ9Y2N7 SNORD115-22-201ENST00000364456 82 ntBASIC1.62□□□□□ -2.15
HIF3AQ9Y2N7 RNA5SP182-201ENST00000516064 82 ntBASIC1.62□□□□□ -2.15
HIF3AQ9Y2N7 RNU7-13P-201ENST00000516413 62 ntBASIC1.62□□□□□ -2.15
HIF3AQ9Y2N7 MIR4419B-201ENST00000577260 68 ntBASIC1.62□□□□□ -2.15
HIF3AQ9Y2N7 SNORD115-24-201ENST00000363528 82 ntBASIC1.61□□□□□ -2.15
HIF3AQ9Y2N7 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.61□□□□□ -2.15
HIF3AQ9Y2N7 RNU7-56P-201ENST00000458744 62 ntBASIC1.61□□□□□ -2.15
HIF3AQ9Y2N7 SNORA70.22-201ENST00000517160 124 ntBASIC1.61□□□□□ -2.15
HIF3AQ9Y2N7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.61□□□□□ -2.15
HIF3AQ9Y2N7 SNORD48-201ENST00000364953 64 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 MIR9-2-201ENST00000384838 87 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 MIR9-3-201ENST00000385084 90 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 AC244098.3-201ENST00000424803 96 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 RNU7-104P-201ENST00000459398 79 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 RNA5SP458-201ENST00000516188 119 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-295P-201ENST00000516901 104 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 MIR8053-201ENST00000613344 75 ntBASIC1.6□□□□□ -2.15
HIF3AQ9Y2N7 MIR1-1-201ENST00000362147 71 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 RNU6-471P-201ENST00000383944 106 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 Y_RNA.443-201ENST00000384135 111 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 MIR583-201ENST00000384846 75 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 SNORD12-201ENST00000391002 90 ntBASIC1.59□□□□□ -2.15
HIF3AQ9Y2N7 AC003989.2-201ENST00000440224 169 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 208.4 ms