Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 Y_RNA.596-201ENST00000410462 109 ntBASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 AC244505.6-201ENST00000452829 130 ntBASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 RNU6-303P-201ENST00000517091 106 ntBASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 MIR1297-201ENST00000637311 77 ntBASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.62□□□□□ -2.15
AP4E1Q9UPM8 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
AP4E1Q9UPM8 RNU6-994P-201ENST00000410507 111 ntBASIC1.61□□□□□ -2.15
AP4E1Q9UPM8 RNU7-56P-201ENST00000458744 62 ntBASIC1.61□□□□□ -2.15
AP4E1Q9UPM8 RNU6-807P-201ENST00000516805 107 ntBASIC1.61□□□□□ -2.15
AP4E1Q9UPM8 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.61□□□□□ -2.15
AP4E1Q9UPM8 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
AP4E1Q9UPM8 Y_RNA.207-201ENST00000364142 106 ntBASIC1.6□□□□□ -2.15
AP4E1Q9UPM8 Y_RNA.338-201ENST00000365320 114 ntBASIC1.6□□□□□ -2.15
AP4E1Q9UPM8 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
AP4E1Q9UPM8 MIR3140-201ENST00000583685 90 ntBASIC1.6□□□□□ -2.15
AP4E1Q9UPM8 Y_RNA.12-201ENST00000362393 112 ntBASIC1.59□□□□□ -2.15
AP4E1Q9UPM8 RNU6-411P-201ENST00000384451 107 ntBASIC1.59□□□□□ -2.15
AP4E1Q9UPM8 MIR1323-201ENST00000408090 73 ntBASIC1.59□□□□□ -2.15
AP4E1Q9UPM8 RNU6-935P-201ENST00000410371 100 ntBASIC1.59□□□□□ -2.15
AP4E1Q9UPM8 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.59□□□□□ -2.15
AP4E1Q9UPM8 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
AP4E1Q9UPM8 Y_RNA.32-201ENST00000362589 110 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 AC114801.3-201ENST00000510231 177 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 RNU6-977P-201ENST00000516411 103 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 RNU6-1015P-201ENST00000517121 99 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 SNORD53B-201ENST00000577887 78 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 YWHAEP2-201ENST00000580066 112 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 YWHAEP3-201ENST00000582767 121 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 MIR4781-201ENST00000585250 76 ntBASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.58□□□□□ -2.16
AP4E1Q9UPM8 SNORA24B-201ENST00000384176 131 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 MIR100-201ENST00000385259 80 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 RNU6-788P-201ENST00000390967 104 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 SNORD12-201ENST00000391002 90 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 MIR1304-201ENST00000408243 91 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 MIR1827-201ENST00000408549 66 ntBASIC1.57□□□□□ -2.16
AP4E1Q9UPM8 ZNF209P-201ENST00000593450 2304 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 RNY4P3-201ENST00000365254 95 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 MIR451A-201ENST00000385059 72 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 MIR517C-201ENST00000385103 95 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 RNU1-119P-201ENST00000391122 165 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 AL359821.1-201ENST00000605519 182 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 uc_338.16-201ENST00000621804 95 ntBASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
AP4E1Q9UPM8 RNU1-17P-201ENST00000363022 152 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 MIR320A-201ENST00000385302 82 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 SNORA70.22-201ENST00000517160 124 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 AL157834.3-201ENST00000615543 103 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 MIR664A-201ENST00000626086 82 ntBASIC1.55□□□□□ -2.16
AP4E1Q9UPM8 MIR1-1-201ENST00000362147 71 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 Y_RNA.36-201ENST00000362602 112 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 MIR520F-201ENST00000384824 87 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 MIR942-201ENST00000401111 86 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 RNU6-70P-201ENST00000516438 60 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 RNU6-687P-201ENST00000516443 89 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 Y_RNA.681-201ENST00000516445 113 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 SNORA31.14-201ENST00000516728 116 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 RMST_2.1-201ENST00000617263 136 ntBASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
AP4E1Q9UPM8 RNU6-340P-201ENST00000364005 107 ntBASIC1.53□□□□□ -2.16
AP4E1Q9UPM8 RNU6-154P-201ENST00000384306 106 ntBASIC1.53□□□□□ -2.16
AP4E1Q9UPM8 RNA5SP247-201ENST00000411181 105 ntBASIC1.53□□□□□ -2.16
AP4E1Q9UPM8 SNORA31.24-201ENST00000517232 57 ntBASIC1.53□□□□□ -2.16
AP4E1Q9UPM8 RNU1-42P-201ENST00000364033 160 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 SNORA67.5-201ENST00000391036 107 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 AL354695.1-201ENST00000427935 228 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 RNU6-1053P-201ENST00000515930 101 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 U6.81-201ENST00000612550 106 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
AP4E1Q9UPM8 RNU6-330P-201ENST00000363015 107 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 RNA5SP403-201ENST00000363598 108 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 Y_RNA.606-201ENST00000410579 103 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 AC002429.1-201ENST00000437672 148 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 RNU6-634P-201ENST00000459134 106 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 RNU6-287P-201ENST00000516230 98 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 MIR4498-201ENST00000577599 66 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 MIR4303-201ENST00000581299 66 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.51□□□□□ -2.17
AP4E1Q9UPM8 MIR337-201ENST00000362281 93 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU6-824P-201ENST00000363724 104 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 Y_RNA.174-201ENST00000363781 105 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 SNORD115-44-201ENST00000365391 82 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 Y_RNA.371-201ENST00000365591 113 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU6-587P-201ENST00000391282 106 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU2-59P-201ENST00000410482 191 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 AC067940.1-201ENST00000458411 300 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU6-871P-201ENST00000516122 100 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU6-539P-201ENST00000516665 103 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 RNU7-161P-201ENST00000517289 62 ntBASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
AP4E1Q9UPM8 Y_RNA.164-201ENST00000363709 102 ntBASIC1.49□□□□□ -2.17
AP4E1Q9UPM8 SNORA8.1-201ENST00000384250 140 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 259.8 ms