Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC087499.7-201ENST00000441958 109 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 RPL30P7-201ENST00000479312 323 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 RNU6-229P-201ENST00000516614 102 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 MIR4653-201ENST00000585107 83 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.76□□□□□ -2.29
COL4A4P53420 SNORA63.2-201ENST00000362603 126 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU4-58P-201ENST00000363192 141 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU6-1244P-201ENST00000363614 108 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU6-519P-201ENST00000410590 108 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 MIR18B-201ENST00000454574 71 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 AC079140.2-201ENST00000506193 142 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 AC090897.1-201ENST00000580909 226 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 MIR6740-201ENST00000618268 113 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
COL4A4P53420 Y_RNA.119-201ENST00000363301 96 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
COL4A4P53420 RNU7-85P-201ENST00000458851 63 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 snoU13.21-201ENST00000459368 105 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU7-106P-201ENST00000459514 67 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU6-75P-201ENST00000515944 104 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU7-153P-201ENST00000516455 62 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNU6-850P-201ENST00000516934 103 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 AL096861.1-201ENST00000610899 123 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 AC243829.3-201ENST00000622177 108 ntBASIC0.75□□□□□ -2.29
COL4A4P53420 RNA5SP259-201ENST00000365541 109 ntBASIC0.74□□□□□ -2.29
COL4A4P53420 MIR30D-201ENST00000362283 70 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 SNORD113.3-201ENST00000364630 78 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 RNU6-571P-201ENST00000384128 107 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 MIR30A-201ENST00000385092 71 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 RNU6-243P-201ENST00000391140 107 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 RNU6-1254P-201ENST00000391266 104 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 AL450471.1-201ENST00000447509 127 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 snoU13.17-201ENST00000458802 104 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 MIR3664-201ENST00000579074 99 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.73□□□□□ -2.29
COL4A4P53420 MIR1297-201ENST00000637311 77 ntBASIC0.73□□□□□ -2.29
COL4A4P53420 RNA5SP347-201ENST00000362445 119 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 Y_RNA.316-201ENST00000365118 111 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 MT-TF-201ENST00000387314 71 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNA5SP63-201ENST00000391225 112 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 snoU13.11-201ENST00000459219 104 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 TRAJ51-201ENST00000504127 63 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 SNORD111.1-201ENST00000516421 86 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNU6-531P-201ENST00000516694 104 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 MIR5589-201ENST00000579442 60 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 MIR6516-201ENST00000630554 81 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNU6-664P-201ENST00000362381 107 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNU4-32P-201ENST00000363404 141 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNU6-934P-201ENST00000365154 107 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 MIR588-201ENST00000384900 83 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 SNORD93-201ENST00000408813 74 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 SCARNA18B-201ENST00000458806 135 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 RNU6-922P-201ENST00000516753 99 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 YWHAEP2-201ENST00000580066 112 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 YWHAEP3-201ENST00000582767 121 ntBASIC0.72□□□□□ -2.29
COL4A4P53420 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.71□□□□□ -2.3
COL4A4P53420 RNU6-1094P-201ENST00000362416 104 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 RNA5SP264-201ENST00000363115 107 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 RNU6-478P-201ENST00000363904 110 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
COL4A4P53420 SNORD111-201ENST00000408139 94 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 RNU6-1165P-201ENST00000410119 107 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 RNU6-1194P-201ENST00000516208 104 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 SNORA18.5-201ENST00000516616 101 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 MIR4422-201ENST00000581938 83 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 U6.109-201ENST00000636749 87 ntBASIC0.71□□□□□ -2.3
COL4A4P53420 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
COL4A4P53420 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
COL4A4P53420 MIR101-2-201ENST00000362195 79 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 RNU6-161P-201ENST00000363051 106 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 RNU1-36P-201ENST00000365130 165 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 MIR125B2-201ENST00000385128 89 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 RNU6-205P-201ENST00000390858 107 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 RNU6-788P-201ENST00000390967 104 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 snoU13.19-201ENST00000459148 104 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 RNU7-185P-201ENST00000459215 60 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 Y_RNA.648-201ENST00000459455 110 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 AC243829.6-201ENST00000612652 106 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 uc_338.6-201ENST00000613544 171 ntBASIC0.7□□□□□ -2.3
COL4A4P53420 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.7□□□□□ -2.3
COL4A4P53420 MIRLET7F1-201ENST00000362202 87 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-315P-201ENST00000362666 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-654P-201ENST00000364373 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-132P-201ENST00000383863 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 SNORA72.6-201ENST00000384520 129 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNA5SP292-201ENST00000390974 118 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 OR2A41P-201ENST00000473586 105 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 AC048334.1-201ENST00000477975 159 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 SNORA25.16-201ENST00000516741 121 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-165P-201ENST00000517170 99 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 AC145423.2-201ENST00000610631 239 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 SNORD33-201ENST00000362761 85 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-403P-201ENST00000363163 104 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNU6-1229P-201ENST00000364295 107 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 RNY4P3-201ENST00000365254 95 ntBASIC0.69□□□□□ -2.3
COL4A4P53420 Y_RNA.371-201ENST00000365591 113 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 231.6 ms