Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP003327.1-201ENST00000529684 127 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 MIR4698-201ENST00000577795 80 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 Y_RNA.32-201ENST00000362589 110 ntBASIC0.77□□□□□ -2.29
LMX1BO60663 AC002350.1-201ENST00000490759 375 ntBASIC0.77□□□□□ -2.29
LMX1BO60663 SNORA31.14-201ENST00000516728 116 ntBASIC0.77□□□□□ -2.29
LMX1BO60663 RNU6-844P-201ENST00000517175 102 ntBASIC0.77□□□□□ -2.29
LMX1BO60663 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
LMX1BO60663 Y_RNA.57-201ENST00000362806 113 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RNU6-1125P-201ENST00000363601 107 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RNU6-480P-201ENST00000384332 107 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RNU6-535P-201ENST00000384722 107 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RNU7-195P-201ENST00000458793 62 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 RPL39P28-201ENST00000465655 155 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 MIR548H5-201ENST00000580314 60 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.76□□□□□ -2.29
LMX1BO60663 MIR101-2-201ENST00000362195 79 ntBASIC0.75□□□□□ -2.29
LMX1BO60663 MIR635-201ENST00000384830 98 ntBASIC0.75□□□□□ -2.29
LMX1BO60663 AC244505.6-201ENST00000452829 130 ntBASIC0.75□□□□□ -2.29
LMX1BO60663 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.75□□□□□ -2.29
LMX1BO60663 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
LMX1BO60663 SNORD116-10-201ENST00000363791 102 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 MIR573-201ENST00000384964 99 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 RNU6-1254P-201ENST00000391266 104 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 RNU7-85P-201ENST00000458851 63 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 snoU13.11-201ENST00000459219 104 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.74□□□□□ -2.29
LMX1BO60663 AL136317.1-201ENST00000612653 226 ntBASIC0.74□□□□□ -2.29
LMX1BO60663 RNU6-1260P-201ENST00000362944 107 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 Y_RNA.96-201ENST00000363092 109 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 Y_RNA.220-201ENST00000364244 109 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 AL606490.4-201ENST00000423117 127 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 AC244098.3-201ENST00000424803 96 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 RNU6-75P-201ENST00000515944 104 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 AC026421.1-201ENST00000519101 163 ntBASIC0.73□□□□□ -2.29
LMX1BO60663 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 RNU6-294P-201ENST00000364999 102 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 RNU6-497P-201ENST00000365316 104 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 MIR644A-201ENST00000385262 94 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 SNORD99-201ENST00000408612 74 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 AL161932.1-201ENST00000437408 146 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 Y_RNA.648-201ENST00000459455 110 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 AC138907.6-201ENST00000568401 126 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 AC138869.1-201ENST00000568623 124 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 AC025627.3-201ENST00000582078 182 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 MIR4661-201ENST00000582720 75 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 RNU7-10P-201ENST00000607194 63 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 MIR4679-1-201ENST00000637619 75 ntBASIC0.72□□□□□ -2.29
LMX1BO60663 RNU6-957P-201ENST00000363652 99 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 RNU6-219P-201ENST00000364728 107 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 AC097635.1-201ENST00000450678 155 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 SNORD4B-201ENST00000459083 72 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 Y_RNA.809-201ENST00000516058 95 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 MIR3612-201ENST00000579753 87 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 MIR4714-201ENST00000580728 77 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 AL353765.1-201ENST00000605514 183 ntBASIC0.71□□□□□ -2.3
LMX1BO60663 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
LMX1BO60663 MIR599-201ENST00000385069 95 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 RNU6-243P-201ENST00000391140 107 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 Y_RNA.593-201ENST00000410292 98 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 RNU6-351P-201ENST00000516097 100 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 RNU6-1265P-201ENST00000516342 103 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 RNU6-267P-201ENST00000516714 103 ntBASIC0.7□□□□□ -2.3
LMX1BO60663 RNA5SP403-201ENST00000363598 108 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 Y_RNA.174-201ENST00000363781 105 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 Y_RNA.609-201ENST00000410669 89 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 RNU6-762P-201ENST00000517107 102 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 RNU7-161P-201ENST00000517289 62 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 AC011195.1-201ENST00000578177 177 ntBASIC0.69□□□□□ -2.3
LMX1BO60663 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.69□□□□□ -2.3
LMX1BO60663 MIR18A-201ENST00000362310 71 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 Y_RNA.17-201ENST00000362433 111 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 SNORD18A-201ENST00000363753 72 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 Y_RNA.221-201ENST00000364248 96 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 Y_RNA.283-201ENST00000364798 112 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 RNU6-675P-201ENST00000384236 104 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 RNU6-524P-201ENST00000384270 107 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 MIR193B-201ENST00000384907 83 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 RNU6-402P-201ENST00000410678 103 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 Y_RNA.620-201ENST00000411009 88 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 MIR3678-201ENST00000578455 94 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 MIR4668-201ENST00000582284 70 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 MTRNR2L2-201ENST00000604882 87 ntBASIC0.68□□□□□ -2.3
LMX1BO60663 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.68□□□□□ -2.3
LMX1BO60663 SNORD73B-201ENST00000364394 72 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 SNORD115-27-201ENST00000364430 82 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 RNA5SP117-201ENST00000365294 118 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 MIR146A-201ENST00000385201 99 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.67□□□□□ -2.3
LMX1BO60663 MIR6513-201ENST00000621188 64 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 MIR6835-201ENST00000621552 64 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 TRDV1-202ENST00000621643 102 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 U6.100-201ENST00000636230 99 ntBASIC0.67□□□□□ -2.3
LMX1BO60663 RNU6-132P-201ENST00000383863 107 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 SNORD28-201ENST00000384706 75 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 ACA64.5-201ENST00000516207 127 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 177.5 ms