Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MIR635-201ENST00000384830 98 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 AC244098.3-201ENST00000424803 96 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 AC092628.1-201ENST00000436250 252 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 AL161932.1-201ENST00000437408 146 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 RNU6-765P-201ENST00000516916 99 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 MIR6515-201ENST00000619843 57 ntBASIC0.9□□□□□ -2.27
FOXN3O00409 Y_RNA.369-201ENST00000365568 117 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 MIR573-201ENST00000384964 99 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 Y_RNA.609-201ENST00000410669 89 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 snoU13.11-201ENST00000459219 104 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 RNU6-1223P-201ENST00000517124 104 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 AC026421.1-201ENST00000519101 163 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 MIR6857-201ENST00000613267 93 ntBASIC0.89□□□□□ -2.27
FOXN3O00409 Y_RNA.96-201ENST00000363092 109 ntBASIC0.88□□□□□ -2.27
FOXN3O00409 SNORA31.14-201ENST00000516728 116 ntBASIC0.88□□□□□ -2.27
FOXN3O00409 RNU6-762P-201ENST00000517107 102 ntBASIC0.88□□□□□ -2.27
FOXN3O00409 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.88□□□□□ -2.27
FOXN3O00409 MIR548H5-201ENST00000580314 60 ntBASIC0.88□□□□□ -2.27
FOXN3O00409 Y_RNA.56-201ENST00000362798 112 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 SNORD116-10-201ENST00000363791 102 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 SNORD114-2-201ENST00000363953 78 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 RNY1P4-201ENST00000384595 115 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 MIR644A-201ENST00000385262 94 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 RNU6-243P-201ENST00000391140 107 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 AP003327.1-201ENST00000529684 127 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 MIR3612-201ENST00000579753 87 ntBASIC0.87□□□□□ -2.27
FOXN3O00409 MIR494-201ENST00000349529 81 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 RNU6-1254P-201ENST00000391266 104 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 RNU6-402P-201ENST00000410678 103 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 AL606490.4-201ENST00000423117 127 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.86□□□□□ -2.27
FOXN3O00409 Y_RNA.809-201ENST00000516058 95 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 RNU6-267P-201ENST00000516714 103 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 PVT1_3.1-201ENST00000620853 95 ntBASIC0.86□□□□□ -2.27
FOXN3O00409 SNORD36A-201ENST00000362874 73 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 Y_RNA.221-201ENST00000364248 96 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 RNY1P8-201ENST00000383970 114 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 MIR7-2-201ENST00000384970 110 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 MIR599-201ENST00000385069 95 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 Y_RNA.593-201ENST00000410292 98 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 RNA5SP436-201ENST00000516020 115 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 RNA5SP480-201ENST00000516840 109 ntBASIC0.85□□□□□ -2.27
FOXN3O00409 Y_RNA.17-201ENST00000362433 111 ntBASIC0.84□□□□□ -2.27
FOXN3O00409 RNU6-957P-201ENST00000363652 99 ntBASIC0.84□□□□□ -2.27
FOXN3O00409 RNU6-524P-201ENST00000384270 107 ntBASIC0.84□□□□□ -2.27
FOXN3O00409 RNU7-85P-201ENST00000458851 63 ntBASIC0.84□□□□□ -2.27
FOXN3O00409 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.84□□□□□ -2.27
FOXN3O00409 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.84□□□□□ -2.27
FOXN3O00409 uc_338.16-201ENST00000621804 95 ntBASIC0.84□□□□□ -2.27
FOXN3O00409 Y_RNA.73-201ENST00000362910 113 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNU4-32P-201ENST00000363404 141 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 SNORD73B-201ENST00000364394 72 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNA5SP117-201ENST00000365294 118 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNU4-45P-201ENST00000365469 141 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNU6-110P-201ENST00000384508 104 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNU6-519P-201ENST00000410590 108 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 AC002350.1-201ENST00000490759 375 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 AC138907.6-201ENST00000568401 126 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 AC138869.1-201ENST00000568623 124 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 RNU7-10P-201ENST00000607194 63 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.83□□□□□ -2.28
FOXN3O00409 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.83□□□□□ -2.28
FOXN3O00409 Y_RNA.558-201ENST00000384685 113 ntBASIC0.82□□□□□ -2.28
FOXN3O00409 RNU6-466P-201ENST00000391224 103 ntBASIC0.82□□□□□ -2.28
FOXN3O00409 AC097635.1-201ENST00000450678 155 ntBASIC0.82□□□□□ -2.28
FOXN3O00409 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.82□□□□□ -2.28
FOXN3O00409 MIR4668-201ENST00000582284 70 ntBASIC0.82□□□□□ -2.28
FOXN3O00409 SNORD115-27-201ENST00000364430 82 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 Y_RNA.283-201ENST00000364798 112 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 MIR598-201ENST00000384868 97 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 Y_RNA.648-201ENST00000459455 110 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 AC062037.1-201ENST00000605302 128 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 TRDV1-202ENST00000621643 102 ntBASIC0.81□□□□□ -2.28
FOXN3O00409 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
FOXN3O00409 MIRLET7F1-201ENST00000362202 87 ntBASIC0.8□□□□□ -2.28
FOXN3O00409 SNORD115-24-201ENST00000363528 82 ntBASIC0.8□□□□□ -2.28
FOXN3O00409 SNORD116-22-201ENST00000384430 92 ntBASIC0.8□□□□□ -2.28
FOXN3O00409 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.8□□□□□ -2.28
FOXN3O00409 MIR18A-201ENST00000362310 71 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 RNU6-219P-201ENST00000364728 107 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 SNORD4B-201ENST00000459083 72 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 RNU7-104P-201ENST00000459398 79 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 MIR5000-201ENST00000577717 103 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 U6.100-201ENST00000636230 99 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
FOXN3O00409 RNU6-1260P-201ENST00000362944 107 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 Y_RNA.174-201ENST00000363781 105 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 RNY1P1-201ENST00000364372 112 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 Y_RNA.620-201ENST00000411009 88 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 RNU6-75P-201ENST00000515944 104 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 RNU6-469P-201ENST00000516253 101 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 RNU6-65P-201ENST00000516332 98 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 CYP3A137P-201ENST00000562436 69 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 MIR3678-201ENST00000578455 94 ntBASIC0.78□□□□□ -2.28
FOXN3O00409 MIR4536-1-201ENST00000583537 88 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 198.7 ms