Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC023934.1-201ENST00000574529 2389 ntBASIC1.65□□□□□ -2.14
USHBP1Q8N6Y0 RNU1-93P-201ENST00000364704 169 ntBASIC1.65□□□□□ -2.15
USHBP1Q8N6Y0 Y_RNA.313-201ENST00000365095 103 ntBASIC1.65□□□□□ -2.15
USHBP1Q8N6Y0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.65□□□□□ -2.15
USHBP1Q8N6Y0 SNORD4B-201ENST00000459083 72 ntBASIC1.65□□□□□ -2.15
USHBP1Q8N6Y0 AC036111.3-201ENST00000526389 112 ntBASIC1.65□□□□□ -2.15
USHBP1Q8N6Y0 SNORD115-27-201ENST00000364430 82 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 SNORA72.6-201ENST00000384520 129 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 MIR516A2-201ENST00000384888 90 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 MIR516A1-201ENST00000385033 90 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-1254P-201ENST00000391266 104 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 SNORD111-201ENST00000408139 94 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 AC087499.7-201ENST00000441958 109 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 AC093729.1-201ENST00000513074 128 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 SNORA31.2-201ENST00000516019 134 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 RNA5SP395-201ENST00000516567 118 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-902P-201ENST00000517212 91 ntBASIC1.64□□□□□ -2.15
USHBP1Q8N6Y0 SNORD36A-201ENST00000362874 73 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 MIR520E-201ENST00000384867 87 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 MIR1236-201ENST00000408340 102 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 snoU13.21-201ENST00000459368 105 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 Y_RNA.648-201ENST00000459455 110 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-1194P-201ENST00000516208 104 ntBASIC1.63□□□□□ -2.15
USHBP1Q8N6Y0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 SNORD115-37-201ENST00000363768 82 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-524P-201ENST00000384270 107 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 SNORA75.2-201ENST00000391138 150 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-243P-201ENST00000391140 107 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 SNORA75.3-201ENST00000391231 150 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 MIR1257-201ENST00000408490 117 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 SNORD83.1-201ENST00000411362 77 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 AL591704.2-201ENST00000421658 181 ntBASIC1.62□□□□□ -2.15
USHBP1Q8N6Y0 MIR101-2-201ENST00000362195 79 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-997P-201ENST00000384725 107 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 MIR635-201ENST00000384830 98 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 RNA5SP225-201ENST00000410874 135 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 RNU7-106P-201ENST00000459514 67 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 RPS29P1-201ENST00000465274 159 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 AC013244.2-201ENST00000603396 103 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 AC106800.4-201ENST00000614905 153 ntBASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.61□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-652P-201ENST00000365488 107 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 SNORA80D-201ENST00000384488 135 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 RNU7-85P-201ENST00000458851 63 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 AL078603.1-201ENST00000603824 313 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 RNU7-10P-201ENST00000607194 63 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 MIR6082-201ENST00000613604 109 ntBASIC1.6□□□□□ -2.15
USHBP1Q8N6Y0 Y_RNA.13-201ENST00000362403 112 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 MIR125B2-201ENST00000385128 89 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 MIR758-201ENST00000390227 88 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 RNU6-279P-201ENST00000391297 101 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 SNORD100-201ENST00000408573 76 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 SNORD63B-201ENST00000411005 70 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 RNU7-21P-201ENST00000459430 62 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 MIR548H5-201ENST00000580314 60 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 MIR4536-1-201ENST00000583537 88 ntBASIC1.59□□□□□ -2.15
USHBP1Q8N6Y0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.56-201ENST00000362798 112 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 RNU4-32P-201ENST00000363404 141 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 RPS26P5-201ENST00000418544 335 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 MIR4771-2-201ENST00000577758 74 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 MIR4771-1-201ENST00000582617 74 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 MIR6734-201ENST00000621166 68 ntBASIC1.58□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.536-201ENST00000384621 113 ntBASIC1.57□□□□□ -2.16
USHBP1Q8N6Y0 snoU13.11-201ENST00000459219 104 ntBASIC1.57□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-65P-201ENST00000516332 98 ntBASIC1.57□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-765P-201ENST00000516916 99 ntBASIC1.57□□□□□ -2.16
USHBP1Q8N6Y0 AC023827.1-201ENST00000569247 97 ntBASIC1.57□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.316-201ENST00000365118 111 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-910P-201ENST00000390844 107 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 RNU7-90P-201ENST00000459216 62 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 RNU7-153P-201ENST00000516455 62 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 RNU7-156P-201ENST00000517214 74 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 AC140658.3-201ENST00000567603 271 ntBASIC1.56□□□□□ -2.16
USHBP1Q8N6Y0 TRAJ51-201ENST00000504127 63 ntBASIC1.55□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-42P-201ENST00000384165 107 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-24P-201ENST00000384440 107 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 MIR519A1-201ENST00000385257 85 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 AC015818.7-201ENST00000428754 109 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-857P-201ENST00000515893 110 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 SNORD79.1-201ENST00000516069 84 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 SNORA25.13-201ENST00000516395 103 ntBASIC1.54□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.244-201ENST00000364484 109 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.283-201ENST00000364798 112 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 RNU6-466P-201ENST00000391224 103 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 RNA5SP220-201ENST00000516298 104 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 SNORA70.22-201ENST00000517160 124 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 MIR4676-201ENST00000583078 72 ntBASIC1.53□□□□□ -2.16
USHBP1Q8N6Y0 Y_RNA.42-201ENST00000362660 108 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-811P-201ENST00000384069 107 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-364P-201ENST00000384387 107 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 MIR938-201ENST00000401216 83 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 AC092628.1-201ENST00000436250 252 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 RNU7-195P-201ENST00000458793 62 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 254.1 ms