Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR376B-201ENST00000614515 100 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 RNU6-811P-201ENST00000384069 107 ntBASIC-0.78□□□□□ -2.53
HDDC3Q8N4P3 MIR1468-201ENST00000410600 86 ntBASIC-0.78□□□□□ -2.53
HDDC3Q8N4P3 AC069503.3-201ENST00000618674 145 ntBASIC-0.78□□□□□ -2.53
HDDC3Q8N4P3 SNORD115-44-201ENST00000365391 82 ntBASIC-0.79□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.79□□□□□ -2.54
HDDC3Q8N4P3 RNU6-616P-201ENST00000384353 107 ntBASIC-0.79□□□□□ -2.54
HDDC3Q8N4P3 MIR3681-201ENST00000580089 72 ntBASIC-0.79□□□□□ -2.54
HDDC3Q8N4P3 SNORD115-35-201ENST00000365122 82 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 MIR181B2-201ENST00000385004 89 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 MIR548F4-201ENST00000408515 105 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 YWHAEP2-201ENST00000580066 112 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 MIR3149-201ENST00000584629 83 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 MIR6507-201ENST00000613630 70 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 FTX_2.1-201ENST00000618816 94 ntBASIC-0.8□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 MIR617-201ENST00000385030 97 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 AP001328.1-201ENST00000528550 176 ntBASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.81□□□□□ -2.54
HDDC3Q8N4P3 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 SNORD114-29-201ENST00000364819 70 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU6-1160P-201ENST00000384546 104 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 MIR519E-201ENST00000385075 84 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU6-588P-201ENST00000410281 105 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU6-735P-201ENST00000410612 107 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU7-106P-201ENST00000459514 67 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNY4P20-201ENST00000516678 93 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 RNU6-850P-201ENST00000516934 103 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 MIR4460-201ENST00000577862 86 ntBASIC-0.82□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.47-201ENST00000362697 108 ntBASIC-0.83□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.83□□□□□ -2.54
HDDC3Q8N4P3 SNORD38.2-201ENST00000384470 69 ntBASIC-0.83□□□□□ -2.54
HDDC3Q8N4P3 MIR3646-201ENST00000578301 84 ntBASIC-0.83□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.84□□□□□ -2.54
HDDC3Q8N4P3 AL603914.1-201ENST00000401964 204 ntBASIC-0.84□□□□□ -2.54
HDDC3Q8N4P3 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.84□□□□□ -2.54
HDDC3Q8N4P3 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.84□□□□□ -2.54
HDDC3Q8N4P3 AL117187.1-201ENST00000555482 181 ntBASIC-0.84□□□□□ -2.54
HDDC3Q8N4P3 RNA5SP205-201ENST00000364653 136 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 SNORD37.2-201ENST00000391075 66 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 RNU4-71P-201ENST00000516258 113 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 MIR548AG2-201ENST00000581228 64 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 AL137067.1-201ENST00000615933 120 ntBASIC-0.85□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 RNU6-312P-201ENST00000364629 107 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 MIR34C-201ENST00000384831 77 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 MIR516A2-201ENST00000384888 90 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 MIR516A1-201ENST00000385033 90 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 RNU6-918P-201ENST00000391219 106 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.86□□□□□ -2.55
HDDC3Q8N4P3 MIR655-201ENST00000362159 97 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 MIR196A2-201ENST00000385189 110 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 SNORD58.1-201ENST00000391313 66 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 RNU6-284P-201ENST00000411105 106 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 MIR2113-201ENST00000459007 91 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 AC008737.2-201ENST00000599446 118 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 AC087741.2-201ENST00000619415 172 ntBASIC-0.87□□□□□ -2.55
HDDC3Q8N4P3 RNU4-84P-201ENST00000364200 139 ntBASIC-0.88□□□□□ -2.55
HDDC3Q8N4P3 RNU6-309P-201ENST00000364573 106 ntBASIC-0.88□□□□□ -2.55
HDDC3Q8N4P3 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.88□□□□□ -2.55
HDDC3Q8N4P3 MIR4723-201ENST00000585070 81 ntBASIC-0.88□□□□□ -2.55
HDDC3Q8N4P3 RNU6-508P-201ENST00000363231 103 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 SNORA51.5-201ENST00000384126 131 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 RNU6-154P-201ENST00000384306 106 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 AC093423.1-201ENST00000440817 142 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 RNU7-6P-201ENST00000516845 62 ntBASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.89□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 SNORD114-11-201ENST00000363738 75 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 MIR606-201ENST00000384851 96 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 AC114755.3-201ENST00000481111 251 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 AL590491.3-201ENST00000610731 82 ntBASIC-0.9□□□□□ -2.55
HDDC3Q8N4P3 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.91□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.91□□□□□ -2.56
HDDC3Q8N4P3 RNU6-480P-201ENST00000384332 107 ntBASIC-0.91□□□□□ -2.56
HDDC3Q8N4P3 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 MIR587-201ENST00000384845 96 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 MIR548AE1-201ENST00000583292 70 ntBASIC-0.92□□□□□ -2.56
HDDC3Q8N4P3 RNU4-32P-201ENST00000363404 141 ntBASIC-0.93□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 564.6 ms