Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNA5SP451-201ENST00000410588 110 ntBASIC-0.45□□□□□ -2.48
RFX3P48380 HAR1A.1-201ENST00000459583 118 ntBASIC-0.45□□□□□ -2.48
RFX3P48380 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.45□□□□□ -2.48
RFX3P48380 RNU1-141P-201ENST00000364623 158 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 SNORD14C-201ENST00000365382 88 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 RNU6-524P-201ENST00000384270 107 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 RNU6-738P-201ENST00000384531 106 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 RNU6-588P-201ENST00000410281 105 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 MIR548AE1-201ENST00000583292 70 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 AC009779.6-201ENST00000603972 165 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 AL162726.3-218ENST00000636401 95 ntBASIC-0.46□□□□□ -2.48
RFX3P48380 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 RNU6-239P-201ENST00000390990 99 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 MTCYBP9-201ENST00000431021 303 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 RNU7-106P-201ENST00000459514 67 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 AL590491.3-201ENST00000610731 82 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 MIR376B-201ENST00000614515 100 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 AL137067.1-201ENST00000615933 120 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 AC069503.3-201ENST00000618674 145 ntBASIC-0.47□□□□□ -2.48
RFX3P48380 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 RNU6-616P-201ENST00000384353 107 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 SNORD38.2-201ENST00000384470 69 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 MIR617-201ENST00000385030 97 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 MIR519E-201ENST00000385075 84 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.48□□□□□ -2.49
RFX3P48380 SNORD126-201ENST00000459475 77 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.48□□□□□ -2.49
RFX3P48380 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 SNORD114-15-201ENST00000364687 72 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 MIR196A2-201ENST00000385189 110 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 RNU7-121P-201ENST00000516604 62 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 RNY4P20-201ENST00000516678 93 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 MIR3128-201ENST00000581957 66 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 AC062037.2-201ENST00000610137 73 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 uc_338.10-201ENST00000621872 182 ntBASIC-0.49□□□□□ -2.49
RFX3P48380 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNY1P11-201ENST00000363759 113 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNU4-84P-201ENST00000364200 139 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNU6-309P-201ENST00000364573 106 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 SNORA20.1-201ENST00000364790 130 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNU6-480P-201ENST00000384332 107 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNU6-175P-201ENST00000516896 107 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNU6-850P-201ENST00000516934 103 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 YWHAEP2-201ENST00000580066 112 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 AC108676.2-201ENST00000605225 163 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.5□□□□□ -2.49
RFX3P48380 RNA5SP368-201ENST00000364298 116 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 SNORA32.3-201ENST00000384772 121 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 SNORD37.2-201ENST00000391075 66 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 AC093423.1-201ENST00000440817 142 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.51□□□□□ -2.49
RFX3P48380 MIR539-201ENST00000365690 78 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 RNU6-47P-201ENST00000383866 107 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 MIR34C-201ENST00000384831 77 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 MIR181B2-201ENST00000385004 89 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.52□□□□□ -2.49
RFX3P48380 AL161932.1-201ENST00000437408 146 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 RPS29P8-201ENST00000445109 171 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 snoU13.19-201ENST00000459148 104 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 AC114755.3-201ENST00000481111 251 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 RNU6-111P-201ENST00000517179 105 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 MIR548AZ-201ENST00000616567 95 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 U4.1-201ENST00000620349 87 ntBASIC-0.52□□□□□ -2.49
RFX3P48380 SNORD115-19-201ENST00000363098 82 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 SNORD115-18-201ENST00000363293 82 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 SNORD115-17-201ENST00000364612 82 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 SNORD114-29-201ENST00000364819 70 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 SNORA51.5-201ENST00000384126 131 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 MIR516A2-201ENST00000384888 90 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 MIR516A1-201ENST00000385033 90 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 RNU6-284P-201ENST00000411105 106 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 MIR4432-201ENST00000581823 84 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 AC087741.2-201ENST00000619415 172 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 uc_338.36-201ENST00000622331 158 ntBASIC-0.53□□□□□ -2.49
RFX3P48380 MIR2113-201ENST00000459007 91 ntBASIC-0.54□□□□□ -2.5
RFX3P48380 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.54□□□□□ -2.5
RFX3P48380 AC072026.1-201ENST00000605023 201 ntBASIC-0.54□□□□□ -2.5
RFX3P48380 FTX_2.1-201ENST00000618816 94 ntBASIC-0.54□□□□□ -2.5
RFX3P48380 RNU6-154P-201ENST00000384306 106 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 RNU6-455P-201ENST00000384681 107 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 RNU7-6P-201ENST00000516845 62 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 RNA5SP169-201ENST00000517268 117 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 MIR4460-201ENST00000577862 86 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 MIR3163-201ENST00000581592 73 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 179.4 ms