Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Y_RNA.42-201ENST00000362660 108 ntBASIC1.35□□□□□ -2.19
MSX2P35548 SNORA80D-201ENST00000384488 135 ntBASIC1.35□□□□□ -2.19
MSX2P35548 RNU6-910P-201ENST00000390844 107 ntBASIC1.35□□□□□ -2.19
MSX2P35548 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.35□□□□□ -2.19
MSX2P35548 AC093729.1-201ENST00000513074 128 ntBASIC1.35□□□□□ -2.19
MSX2P35548 SNORD79.1-201ENST00000516069 84 ntBASIC1.35□□□□□ -2.19
MSX2P35548 RNU7-40P-201ENST00000516397 64 ntBASIC1.35□□□□□ -2.19
MSX2P35548 RNU7-153P-201ENST00000516455 62 ntBASIC1.35□□□□□ -2.19
MSX2P35548 RNU6-765P-201ENST00000516916 99 ntBASIC1.35□□□□□ -2.19
MSX2P35548 MIR4303-201ENST00000581299 66 ntBASIC1.35□□□□□ -2.19
MSX2P35548 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
MSX2P35548 RNA5SP327-201ENST00000362494 101 ntBASIC1.34□□□□□ -2.19
MSX2P35548 Y_RNA.316-201ENST00000365118 111 ntBASIC1.34□□□□□ -2.19
MSX2P35548 RNU6-243P-201ENST00000391140 107 ntBASIC1.34□□□□□ -2.19
MSX2P35548 AP1B1P2-201ENST00000416196 106 ntBASIC1.34□□□□□ -2.19
MSX2P35548 RPS26P5-201ENST00000418544 335 ntBASIC1.34□□□□□ -2.19
MSX2P35548 TRAJ51-201ENST00000504127 63 ntBASIC1.34□□□□□ -2.19
MSX2P35548 AC140658.3-201ENST00000567603 271 ntBASIC1.34□□□□□ -2.19
MSX2P35548 MIR4255-201ENST00000579351 72 ntBASIC1.34□□□□□ -2.19
MSX2P35548 MIR7111-201ENST00000619751 72 ntBASIC1.34□□□□□ -2.19
MSX2P35548 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.2
MSX2P35548 MIR26B-201ENST00000362251 77 ntBASIC1.33□□□□□ -2.2
MSX2P35548 Y_RNA.283-201ENST00000364798 112 ntBASIC1.33□□□□□ -2.2
MSX2P35548 RNU6-652P-201ENST00000365488 107 ntBASIC1.33□□□□□ -2.2
MSX2P35548 Y_RNA.536-201ENST00000384621 113 ntBASIC1.33□□□□□ -2.2
MSX2P35548 MIR519A1-201ENST00000385257 85 ntBASIC1.33□□□□□ -2.2
MSX2P35548 MIR1236-201ENST00000408340 102 ntBASIC1.33□□□□□ -2.2
MSX2P35548 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.33□□□□□ -2.2
MSX2P35548 RNU6-75P-201ENST00000515944 104 ntBASIC1.33□□□□□ -2.2
MSX2P35548 MIR4676-201ENST00000583078 72 ntBASIC1.33□□□□□ -2.2
MSX2P35548 AL359821.1-201ENST00000605519 182 ntBASIC1.33□□□□□ -2.2
MSX2P35548 MIR101-2-201ENST00000362195 79 ntBASIC1.32□□□□□ -2.2
MSX2P35548 Y_RNA.56-201ENST00000362798 112 ntBASIC1.32□□□□□ -2.2
MSX2P35548 RNU4-32P-201ENST00000363404 141 ntBASIC1.32□□□□□ -2.2
MSX2P35548 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
MSX2P35548 SNORA67.5-201ENST00000391036 107 ntBASIC1.32□□□□□ -2.2
MSX2P35548 RNU6-857P-201ENST00000515893 110 ntBASIC1.32□□□□□ -2.2
MSX2P35548 AC068338.1-201ENST00000565567 176 ntBASIC1.32□□□□□ -2.2
MSX2P35548 MIR548H5-201ENST00000580314 60 ntBASIC1.32□□□□□ -2.2
MSX2P35548 AL645939.4-201ENST00000604495 135 ntBASIC1.32□□□□□ -2.2
MSX2P35548 MIR635-201ENST00000384830 98 ntBASIC1.31□□□□□ -2.2
MSX2P35548 MIR517C-201ENST00000385103 95 ntBASIC1.31□□□□□ -2.2
MSX2P35548 AC092628.1-201ENST00000436250 252 ntBASIC1.31□□□□□ -2.2
MSX2P35548 RNU7-195P-201ENST00000458793 62 ntBASIC1.31□□□□□ -2.2
MSX2P35548 RNU7-90P-201ENST00000459216 62 ntBASIC1.31□□□□□ -2.2
MSX2P35548 RNU7-156P-201ENST00000517214 74 ntBASIC1.31□□□□□ -2.2
MSX2P35548 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.31□□□□□ -2.2
MSX2P35548 SNORD92-201ENST00000585078 85 ntBASIC1.31□□□□□ -2.2
MSX2P35548 MIR8070-201ENST00000616510 88 ntBASIC1.31□□□□□ -2.2
MSX2P35548 Y_RNA.94-201ENST00000363068 106 ntBASIC1.3□□□□□ -2.2
MSX2P35548 Y_RNA.118-201ENST00000363300 101 ntBASIC1.3□□□□□ -2.2
MSX2P35548 RNU6-957P-201ENST00000363652 99 ntBASIC1.3□□□□□ -2.2
MSX2P35548 SNORD115-37-201ENST00000363768 82 ntBASIC1.3□□□□□ -2.2
MSX2P35548 MIR150-201ENST00000385048 84 ntBASIC1.3□□□□□ -2.2
MSX2P35548 SNORA25.13-201ENST00000516395 103 ntBASIC1.3□□□□□ -2.2
MSX2P35548 RNU6-448P-201ENST00000517052 107 ntBASIC1.3□□□□□ -2.2
MSX2P35548 MIR4536-1-201ENST00000583537 88 ntBASIC1.3□□□□□ -2.2
MSX2P35548 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.3□□□□□ -2.2
MSX2P35548 RNU7-10P-201ENST00000607194 63 ntBASIC1.3□□□□□ -2.2
MSX2P35548 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
MSX2P35548 SNORA25.9-201ENST00000365087 128 ntBASIC1.29□□□□□ -2.2
MSX2P35548 RNU6-132P-201ENST00000383863 107 ntBASIC1.29□□□□□ -2.2
MSX2P35548 MIR499A-201ENST00000384903 122 ntBASIC1.29□□□□□ -2.2
MSX2P35548 RNU6-466P-201ENST00000391224 103 ntBASIC1.29□□□□□ -2.2
MSX2P35548 RNU6-65P-201ENST00000516332 98 ntBASIC1.29□□□□□ -2.2
MSX2P35548 AC019288.1-201ENST00000557918 224 ntBASIC1.29□□□□□ -2.2
MSX2P35548 RNU6-1260P-201ENST00000362944 107 ntBASIC1.28□□□□□ -2.2
MSX2P35548 Y_RNA.244-201ENST00000364484 109 ntBASIC1.28□□□□□ -2.2
MSX2P35548 RNU6-811P-201ENST00000384069 107 ntBASIC1.28□□□□□ -2.2
MSX2P35548 Y_RNA.508-201ENST00000384502 114 ntBASIC1.28□□□□□ -2.2
MSX2P35548 MIR758-201ENST00000390227 88 ntBASIC1.28□□□□□ -2.2
MSX2P35548 RNA5SP292-201ENST00000390974 118 ntBASIC1.28□□□□□ -2.2
MSX2P35548 SNORD12-201ENST00000391002 90 ntBASIC1.28□□□□□ -2.2
MSX2P35548 MIR938-201ENST00000401216 83 ntBASIC1.28□□□□□ -2.2
MSX2P35548 RNU7-95P-201ENST00000459222 64 ntBASIC1.28□□□□□ -2.2
MSX2P35548 Y_RNA.697-201ENST00000516776 113 ntBASIC1.28□□□□□ -2.2
MSX2P35548 SNORA70.22-201ENST00000517160 124 ntBASIC1.28□□□□□ -2.2
MSX2P35548 SNORD53B-201ENST00000577887 78 ntBASIC1.28□□□□□ -2.2
MSX2P35548 MIR3064-201ENST00000581130 66 ntBASIC1.28□□□□□ -2.2
MSX2P35548 MIR4804-201ENST00000581683 73 ntBASIC1.28□□□□□ -2.2
MSX2P35548 MIR4712-201ENST00000583750 82 ntBASIC1.28□□□□□ -2.2
MSX2P35548 SNORA25-201ENST00000384384 134 ntBASIC1.27□□□□□ -2.21
MSX2P35548 RNU6-24P-201ENST00000384440 107 ntBASIC1.27□□□□□ -2.21
MSX2P35548 RNU6-291P-201ENST00000384720 107 ntBASIC1.27□□□□□ -2.21
MSX2P35548 SNORA67.6-201ENST00000391093 99 ntBASIC1.27□□□□□ -2.21
MSX2P35548 AL606490.4-201ENST00000423117 127 ntBASIC1.27□□□□□ -2.21
MSX2P35548 RNU7-102P-201ENST00000458948 62 ntBASIC1.27□□□□□ -2.21
MSX2P35548 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.27□□□□□ -2.21
MSX2P35548 Y_RNA.809-201ENST00000516058 95 ntBASIC1.27□□□□□ -2.21
MSX2P35548 MIR4796-201ENST00000580742 81 ntBASIC1.27□□□□□ -2.21
MSX2P35548 AC104996.3-201ENST00000590718 94 ntBASIC1.27□□□□□ -2.21
MSX2P35548 AC008608.1-201ENST00000603910 127 ntBASIC1.27□□□□□ -2.21
MSX2P35548 AC027335.2-201ENST00000624030 375 ntBASIC1.27□□□□□ -2.21
MSX2P35548 RNU6-624P-201ENST00000363411 107 ntBASIC1.26□□□□□ -2.21
MSX2P35548 RNU6-364P-201ENST00000384387 107 ntBASIC1.26□□□□□ -2.21
MSX2P35548 RNU6-994P-201ENST00000410507 111 ntBASIC1.26□□□□□ -2.21
MSX2P35548 AC097635.1-201ENST00000450678 155 ntBASIC1.26□□□□□ -2.21
MSX2P35548 RNU7-56P-201ENST00000458744 62 ntBASIC1.26□□□□□ -2.21
MSX2P35548 SNORA31.24-201ENST00000517232 57 ntBASIC1.26□□□□□ -2.21
MSX2P35548 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 218.8 ms