Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 RNU7-61P-201ENST00000515897 61 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 MIR4500-201ENST00000579472 76 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 MIR5582-201ENST00000579697 68 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 AC090897.1-201ENST00000580909 226 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 MIR4777-201ENST00000583710 86 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 MIR548Z-201ENST00000584743 97 ntBASIC1.53□□□□□ -2.16
NKX2-4Q9H2Z4 Y_RNA.119-201ENST00000363301 96 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 SNORA72.6-201ENST00000384520 129 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 MIR598-201ENST00000384868 97 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 SNORD12-201ENST00000391002 90 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-644P-201ENST00000391155 98 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.705-201ENST00000516862 110 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 MIR4771-2-201ENST00000577758 74 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 MIR4491-201ENST00000581087 68 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 MIR4771-1-201ENST00000582617 74 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-403P-201ENST00000363163 104 ntBASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.220-201ENST00000364244 109 ntBASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.467-201ENST00000384297 102 ntBASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.51□□□□□ -2.17
NKX2-4Q9H2Z4 HSBP1P2-201ENST00000299671 229 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-1163P-201ENST00000364516 107 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-1131P-201ENST00000364955 107 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.567-201ENST00000384736 106 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 RNU4-83P-201ENST00000410863 133 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 MALAT1.1-201ENST00000618249 95 ntBASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
NKX2-4Q9H2Z4 RNU4-58P-201ENST00000363192 141 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.342-201ENST00000365352 113 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.369-201ENST00000365568 117 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 MIR488-201ENST00000365739 83 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-813P-201ENST00000384691 107 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-972P-201ENST00000391208 107 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 RNU7-40P-201ENST00000516397 64 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 MIR151B-201ENST00000584249 96 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 AC006254.2-201ENST00000603259 279 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-86P-201ENST00000606534 107 ntBASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
NKX2-4Q9H2Z4 RNA5SP327-201ENST00000362494 101 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 SNORA25-201ENST00000384384 134 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 RPS26P5-201ENST00000418544 335 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 AC015818.7-201ENST00000428754 109 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 AC087499.7-201ENST00000441958 109 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 SNORA25.16-201ENST00000516741 121 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 MIR6788-201ENST00000618842 66 ntBASIC1.48□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.173-201ENST00000363776 113 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 Y_RNA.374-201ENST00000365606 101 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 MIR125B2-201ENST00000385128 89 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-887P-201ENST00000410660 100 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 AC023790.1-201ENST00000482174 347 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-531P-201ENST00000516694 104 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 U7.3-201ENST00000616123 62 ntBASIC1.47□□□□□ -2.17
NKX2-4Q9H2Z4 RNU6-1244P-201ENST00000363614 108 ntBASIC1.46□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.46□□□□□ -2.18
NKX2-4Q9H2Z4 MIR548J-201ENST00000408833 112 ntBASIC1.46□□□□□ -2.18
NKX2-4Q9H2Z4 AC067940.1-201ENST00000458411 300 ntBASIC1.46□□□□□ -2.18
NKX2-4Q9H2Z4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 BX276092.1-201ENST00000427368 251 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 AC002429.1-201ENST00000437672 148 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 AC004223.1-201ENST00000479840 271 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-162P-201ENST00000516228 103 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 MIR4676-201ENST00000583078 72 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 AC020891.4-201ENST00000605745 93 ntBASIC1.45□□□□□ -2.18
NKX2-4Q9H2Z4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 MIR1-1-201ENST00000362147 71 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-1125P-201ENST00000363601 107 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 Y_RNA.290-201ENST00000364879 114 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-571P-201ENST00000384128 107 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-49P-201ENST00000384256 107 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-480P-201ENST00000384332 107 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-364P-201ENST00000384387 107 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNY1P7-201ENST00000384743 110 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 SNRPGP12-201ENST00000449481 213 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU1-98P-201ENST00000458992 160 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 RNU7-156P-201ENST00000517214 74 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 AC103810.7-201ENST00000607821 91 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 MIR6082-201ENST00000613604 109 ntBASIC1.44□□□□□ -2.18
NKX2-4Q9H2Z4 MIR101-2-201ENST00000362195 79 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 RNA5SP363-201ENST00000365072 115 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 MIR100-201ENST00000385259 80 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 RNA5SP436-201ENST00000516020 115 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-977P-201ENST00000516411 103 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 MIR3660-201ENST00000584845 100 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 MIR6767-201ENST00000637302 66 ntBASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-294P-201ENST00000364999 102 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 SNORD26-201ENST00000384147 75 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 SNORA40.6-201ENST00000391153 128 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 200.5 ms