Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-774P-201ENST00000363238 107 ntBASIC-2.51□□□□□ -2.81
CUX1P39880 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.51□□□□□ -2.81
CUX1P39880 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-2.51□□□□□ -2.81
CUX1P39880 DEFB117-201ENST00000602356 141 ntBASIC-2.51□□□□□ -2.81
CUX1P39880 AC097639.2-201ENST00000603159 172 ntBASIC-2.51□□□□□ -2.81
CUX1P39880 RNU6-243P-201ENST00000391140 107 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 U3.27-201ENST00000391237 200 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 RNA5SP144-201ENST00000410846 116 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-2.52□□□□□ -2.81
CUX1P39880 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 RNU6-89P-201ENST00000606519 100 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 U6.96-201ENST00000636425 70 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 Y_RNA.373-201ENST00000365600 103 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 Y_RNA.383-201ENST00000383855 97 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 Y_RNA.482-201ENST00000384377 111 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 Y_RNA.531-201ENST00000384589 121 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 MIR206-201ENST00000384872 86 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 SNORD5.1-201ENST00000458800 75 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 RNU6-1299P-201ENST00000516316 100 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 AC009779.6-201ENST00000603972 165 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 AC103591.3-201ENST00000608684 209 ntBASIC-2.52□□□□□ -2.81
CUX1P39880 Y_RNA.448-201ENST00000384185 108 ntBASIC-2.53□□□□□ -2.81
CUX1P39880 RNU6-297P-201ENST00000384636 107 ntBASIC-2.53□□□□□ -2.81
CUX1P39880 Y_RNA.558-201ENST00000384685 113 ntBASIC-2.53□□□□□ -2.81
CUX1P39880 MIR4724-201ENST00000579485 89 ntBASIC-2.53□□□□□ -2.81
CUX1P39880 AC005014.2-201ENST00000607795 599 ntBASIC-2.53□□□□□ -2.81
CUX1P39880 Y_RNA.248-201ENST00000364501 109 ntBASIC-2.54□□□□□ -2.82
CUX1P39880 RNU6-306P-201ENST00000384617 107 ntBASIC-2.54□□□□□ -2.82
CUX1P39880 snoU109.3-201ENST00000459477 145 ntBASIC-2.54□□□□□ -2.82
CUX1P39880 RNA5SP153-201ENST00000516498 76 ntBASIC-2.54□□□□□ -2.82
CUX1P39880 Y_RNA.231-201ENST00000364358 102 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 Y_RNA.542-201ENST00000384641 111 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 AL161932.1-201ENST00000437408 146 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 MIR3129-201ENST00000581095 76 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 MIR4696-201ENST00000581431 70 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 MIR548AE2-201ENST00000583456 67 ntBASIC-2.55□□□□□ -2.82
CUX1P39880 RNU6-647P-201ENST00000364243 107 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 SNORA63.6-201ENST00000364921 119 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 Y_RNA.380-201ENST00000365663 111 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 RNU6-1103P-201ENST00000384150 107 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 RNU6-1000P-201ENST00000391066 106 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 Y_RNA.677-201ENST00000516401 85 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 RNU6-256P-201ENST00000516747 97 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 AC092794.2-201ENST00000620933 563 ntBASIC-2.56□□□□□ -2.82
CUX1P39880 Y_RNA.135-201ENST00000363439 95 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 RNU5E-4P-201ENST00000364931 120 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 Y_RNA.381-201ENST00000365666 102 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 Y_RNA.570-201ENST00000384750 101 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 RNU6-258P-201ENST00000390884 101 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 SNRPGP8-201ENST00000454064 226 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 AC087741.2-201ENST00000619415 172 ntBASIC-2.57□□□□□ -2.82
CUX1P39880 SNORD27-201ENST00000363981 72 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 RNU6-728P-201ENST00000365375 104 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.633-201ENST00000459107 95 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MIR3913-1-201ENST00000577744 102 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MIR4659A-201ENST00000580269 81 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MIR5688-201ENST00000580619 83 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MIR3145-201ENST00000580727 82 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.77-201ENST00000362962 107 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 RNU6-1252P-201ENST00000363054 104 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.153-201ENST00000363615 91 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.157-201ENST00000363638 102 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 Y_RNA.372-201ENST00000365599 102 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MTND2P39-201ENST00000457230 764 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 MIR2053-201ENST00000459295 91 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 AC013791.1-201ENST00000616619 62 ntBASIC-2.58□□□□□ -2.82
CUX1P39880 RNU6-1059P-201ENST00000363752 98 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 SNORD101-201ENST00000384027 73 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 MIR1255B2-201ENST00000408618 67 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 MIR1270-201ENST00000459320 83 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 RNU6-559P-201ENST00000516151 98 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 MIR5692C2-201ENST00000577959 77 ntBASIC-2.59□□□□□ -2.82
CUX1P39880 Y_RNA.23-201ENST00000362496 106 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 SNORD113-6-201ENST00000363345 75 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 RNU6-472P-201ENST00000384299 107 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 MIR514A2-201ENST00000385131 88 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 MIR514A3-201ENST00000385132 88 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 RNU6-248P-201ENST00000410720 107 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 AL353193.1-201ENST00000421444 268 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 RNU7-88P-201ENST00000458752 63 ntBASIC-2.6□□□□□ -2.83
CUX1P39880 RNU6-957P-201ENST00000363652 99 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 Y_RNA.188-201ENST00000363952 111 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 Y_RNA.222-201ENST00000364264 102 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 Y_RNA.299-201ENST00000364973 94 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-2.61□□□□□ -2.83
CUX1P39880 SNORA69.1-201ENST00000390904 137 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 RNU7-2P-201ENST00000516096 62 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 RNU2-4P-201ENST00000606190 192 ntBASIC-2.61□□□□□ -2.83
CUX1P39880 Y_RNA.360-201ENST00000365512 102 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 RNY1P6-201ENST00000384193 109 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 RPS29P25-201ENST00000481709 171 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 CYP3A54P-201ENST00000566950 75 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 MIR4790-201ENST00000577799 79 ntBASIC-2.62□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms